PROJECT INFORMATION
GOLD Project ID
Gp0144544  
Project Name
Caulobacter sp. UKL13  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Aphanizomenon flos-aquae non-axenic culture and interacting bacteria
NCBI BioProject ID 312233
NCBI BioProject Accession PRJNA312233
NCBI Locus Tag
AEM38  
NCBI BioSample Accession SAMN03894414
PI
Added By JGI automated process on 2016-05-18
Last Modified By Hema Katta on 2019-01-08
Project Comments
  
Project Status
Complete and Published  
Project Relevance Environmental
Sequencing Center Oregon State University (USA)
Collaborating Institute
  
Funding Agency
  
Project Description
Sequencing of an Aphanizomenon flos-aquae culture and interacting bacteria. PacBio-sequenced genome assemblies  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications Standards in genomic sciences Towards long-read metagenomics: complete assembly of three novel genomes from bacteria dependent on a diazotrophic cyanobacterium in a freshwater lake co-culture.
Other Publications
  
PROJECT COMPOSITION
Study Aphanizomenon flos-aquae non-axenic culture and interacting bacteria
Organism Caulobacter sp. UKL13
Analysis Projects Caulobacter sp. UKL13
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) PacBio RS
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0139470
Organism Name
Caulobacter sp. UKL13  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-ALPHA  
Genus
  
Genus Synonyms
  
Species
Caulobacter sp. UKL13  
Subspecies
  
Species Synonyms
  
Strain
UKL13  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1690484
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Alphaproteobacteria  
NCBI Order
Rhodobacterales  
NCBI Family
Hyphomonadaceae  
NCBI Genus
  
NCBI Species
Hyphomonadaceae bacterium UKL13-1  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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