PROJECT INFORMATION
GOLD Project ID
Gp0144492  
Project Name
Ruegeria atlantica CECT 4293  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Ruegeria atlantica CECT 4293
NCBI BioProject ID 301121
NCBI BioProject Accession PRJEB10679
NCBI Locus Tag
RUM4293  
NCBI BioSample Accession SAMEA3522225
PI
Added By JGI automated process on 2016-05-18
Last Modified By Supratim Mukherjee on 2017-03-29
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center Spanish Type Culture Collection (CECT) (Spain)
Collaborating Institute
  
Funding Agency
  
Project Description
Ruegeria atlantica is a member of the family Rhodobacteraceae reclassified in 1998 by Uchino et al. as a gen. nov. comb. nov. of Agrobacterium atlanticum, described in 1992 by Rger et. al. Genome sequencing of Ruegeria atlantica CECT 4293 was done using the Illumina Miseq system by the Central Service of Support to Experimental Research (SCSIE) of the University of Valencia (Spain).  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id ERX1080652
Experiment Title Illumina MiSeq paired end sequencing
SRA Submission ID 2007954
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name unspecified
Library Layout PAIRED
Library Instrument Illumina MiSeq
PROJECT COMPOSITION
Study Whole genome sequencing of Ruegeria atlantica CECT 4293
Organism Ruegeria atlantica CECT 4293
Analysis Projects Ruegeria atlantica CECT 4293
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0139421
Organism Name
Ruegeria atlantica CECT 4293  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-ALPHA  
Genus
Ruegeria  
Genus Synonyms
  
Species
Ruegeria atlantica  
Subspecies
  
Species Synonyms
  
Strain
CECT 4293  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 81569
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Alphaproteobacteria  
NCBI Order
Rhodobacterales  
NCBI Family
Rhodobacteraceae  
NCBI Genus
Ruegeria  
NCBI Species
Ruegeria atlantica  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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