PROJECT INFORMATION
GOLD Project ID
Gp0143880  
Project Name
Sphingopyxis terrae terrae NBRC 15098 203-1  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Sphingopyxis terrae terrae NBRC 15098
NCBI BioProject ID 295353
NCBI BioProject Accession PRJNA295353
NCBI Locus Tag
AOA14  
NCBI BioSample Accession SAMN04046241
PI
Added By JGI automated process on 2016-05-18
Last Modified By Supratim Mukherjee on 2018-10-19
Project Comments
  
Project Status
Complete and Published  
Project Relevance Environmental
Sequencing Center Kyoto Institute of Technology
Collaborating Institute
  
Funding Agency
  
Project Description
Sphingopyxis terrae NBRC 15098 Genome sequencing and assembly  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications Genome announcements Complete Genome Sequence of Sphingopyxis terrae Strain 203-1 (NBRC 111660), a Polyethylene Glycol Degrader.

Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Sphingopyxis terrae NBRC 15098 Genome sequencing and assembly
Organism Sphingopyxis terrae terrae NBRC 15098 203-1
Analysis Projects Sphingopyxis terrae terrae NBRC 15098 203-1
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina MiSeq
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0138824
Organism Name
Sphingopyxis terrae terrae NBRC 15098 203-1  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-ALPHA  
Genus
Sphingopyxis  
Genus Synonyms
  
Species
Sphingopyxis terrae  
Subspecies
terrae  
Species Synonyms
  
Strain
203-1  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
NBRC 15098  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.1198  
Exemplar Name
Sphingopyxis terrae terrae  
Taxon DOI
10.1601/tx.31127  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1219058
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Alphaproteobacteria  
NCBI Order
Sphingomonadales  
NCBI Family
Sphingomonadaceae  
NCBI Genus
Sphingopyxis  
NCBI Species
Sphingopyxis terrae  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

  You are going to add the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  You are going to remove permissions for the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  Changing the SP visibility will also change visibility on the following items:

 

Do you want to continue with this visibility change?

 

 

  Checking that this Sequencing Project can be made private:

 

Do you want to continue with this visibility change?