PROJECT INFORMATION
GOLD Project ID
Gp0143869  
Project Name
Chlorobium limicola Frasassi  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Chlorobium limicola strain:Frasassi
NCBI BioProject ID 300282
NCBI BioProject Accession PRJNA300282
NCBI Locus Tag
ASB62  
NCBI BioSample Accession SAMN04217978
PI
Added By JGI automated process on 2016-05-18
Last Modified By Hema Katta on 2017-12-01
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Environmental
Sequencing Center Pennsylvania State University (USA)
Collaborating Institute
  
Funding Agency
  
Project Description
This project aims to sequence the dominant green sulfur bacteria population in mats formed in artificial aquarium in the Frasassi cave system. This study showed that light-utilizing taxa can thrive in a previously dark ecosystem that have been tampered by human activities.  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications Genome announcements Draft Genome Sequence of Lampenflora Chlorobium limicola Strain Frasassi in a Sulfidic Cave System.
Other Publications
  
PROJECT COMPOSITION
Study Chlorobium limicola Frasassi Genome sequencing
Organism Chlorobium limicola Frasassi
Analysis Projects Chlorobium limicola Frasassi
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina HiSeq
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0138814
Organism Name
Chlorobium limicola Frasassi  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
CHLOROBI  
Genus
Chlorobium  
Genus Synonyms
  
Species
Chlorobium limicola  
Subspecies
  
Species Synonyms
  
Strain
Frasassi  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1092
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Chlorobi  
NCBI Class
Chlorobia  
NCBI Order
Chlorobiales  
NCBI Family
Chlorobiaceae  
NCBI Genus
Chlorobium  
NCBI Species
Chlorobium limicola  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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