PROJECT INFORMATION
GOLD Project ID
Gp0140044  
Project Name
Vibrio cholerae sv. Ogawa A200  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Investigating the diversity of Vibrio cholerae isolates.
NCBI BioProject ID 203958
NCBI BioProject Accession PRJEB2215
NCBI Locus Tag
AMP79  
NCBI BioSample Accession SAMEA889302
PI
Added By JGI automated process on 2016-05-06
Last Modified By Supratim Mukherjee on 2017-03-29
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center Wellcome Trust Sanger Institute (United Kingdom)
Collaborating Institute
  
Funding Agency
  
Project Description
Genome sequencing to investigate the diversity of Vibrio cholerae isolates  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id ERX2008981
Experiment Title Illumina Genome Analyzer II paired end sequencing
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name NT28214H
Library Layout PAIRED
Library Instrument ILLUMINA_GENOME_ANALYZER_II
PROJECT COMPOSITION
Study Genome sequencing to investigate the diversity of Salmonella and Vibrio cholerae isolates
Organism Vibrio cholerae sv. Ogawa A200
Analysis Projects Vibrio cholerae sv. Ogawa A200
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0134163
Organism Name
Vibrio cholerae sv. Ogawa A200  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Vibrio  
Genus Synonyms
  
Species
Vibrio cholerae  
Subspecies
  
Species Synonyms
  
Strain
A200  
Strain Synonyms
  
Serovar/Cultivar
Ogawa  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 666
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Gammaproteobacteria  
NCBI Order
Vibrionales  
NCBI Family
Vibrionaceae  
NCBI Genus
Vibrio  
NCBI Species
Vibrio cholerae  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Human  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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