PROJECT INFORMATION
GOLD Project ID
Gp0136576  
Project Name
Bacillus sp. T02C029  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Bacteria isolated from carboxylate platform fermentations inoculated with microbial communities from extreme environments.
NCBI BioProject ID 311332
NCBI BioProject Accession PRJNA311332
NCBI Locus Tag
  
NCBI BioSample Accession SAMN04549647
PI Emma Britain Caraway
Added By Emma Britain Caraway on 2016-03-23
Last Modified By Supratim Mukherjee on 2017-03-13
Project Comments
  
Project Status
incomplete  
Project Relevance
  
Sequencing Center Texas A and M University (USA)
Collaborating Institute
  
Funding Agency
  
Project Description
In an effort to identify microbial communities with superior performances in the carboxylate platform for biofuel and high value chemical production, we screened 501 microbial communities from 77 sites across the continental U.S., Hawaii and Puerto Rico as inocula. From the best performing communities, we collected >1800 individual isolates by culturing with a variety of media and oxygen conditions. We generated draft genome sequence for 64 of the isolates, selected based on phylogenetic, ecological, and phenotypic variation. These sequences will be used to advance a system to study 1) the role of diversity in functional types within carboxylate platform fermentation communities, 2) the genetic basis for superior performance in these fermentations and 3) the basis of adaptation to extreme conditions.  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
PROJECT COMPOSITION
Study Bacteria isolated from carboxylate platform fermentations inoculated with microbial communities from extreme environments
Organism Bacillus sp. T02C029
Analysis Projects
  
Number of Analysis Projects 0
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Draft
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal Level 1: Standard Draft
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina MiSeq
Library Method (MIGS-28)
  
Number Of Reads
579892  
Read Size
  
Vector
  
GC Percent
40  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0126039
Organism Name
Bacillus sp. T02C029  
Other names (alias, synonyms, short names, common names)
T02C029, OTU4, SWRN2  
Organism Domain
BACTERIAL  
Phylogeny
FIRMICUTES  
Genus
Bacillus  
Genus Synonyms
  
Species
Bacillus sp. T02C029  
Subspecies
  
Species Synonyms
  
Strain
T02C029  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1467381
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Firmicutes  
NCBI Class
Bacilli  
NCBI Order
Bacillales  
NCBI Family
Bacillaceae  
NCBI Genus
Bacillus  
NCBI Species
Bacillus sp. T02C029  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Terrestrial  
Ecosystem Type
Soil  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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