PROJECT INFORMATION
GOLD Project ID
Gp0013326  
Project Name
Streptococcus pneumoniae R6M2-PG  
Other Names
  
Legacy ER Project ID
6217  
Legacy GOLD ID
Gi10983  
NCBI BioProject Name Streptococcus pneumoniae R6M2-PG
NCBI BioProject ID 73471
NCBI BioProject Accession PRJNA73471
NCBI Locus Tag
KQY  
NCBI BioSample Accession SAMN00739875
PI Marc Ouellette
Added By Nikos Kyrpides on 2011-12-14
Last Modified By JGI automated process on 2014-08-18
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Medical
Sequencing Center McGill University (Canada)
Genome Quebec (Canada)
Collaborating Institute Laval University (Canada)
Funding Agency
  
Project Description
The goal of the project is to sequence antibiotic resistant strains of Streptococcus pneumoniae and to compare their genomes to those of sensitive isolates in order to identify mutations associated with resistanc  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications Genome biology 12(11):R115 Whole genome sequencing of penicillin-resistant Streptococcus pneumoniae reveals mutations in penicillin-binding proteins and in a putative iron permease.

Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX101623
Experiment Title Whole genome sequencing of penicillin resistant Streptococcus pneumoniae reveals mutations in penicillin-binding proteins and in a putative iron permease
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name strpr6
Library Layout SINGLE
Library Instrument 454 GS FLX
Spot Length 400
PROJECT COMPOSITION
Study Whole genome sequencing of Russian endemic M. tuberculosis strains
Organism Streptococcus pneumoniae R6M2-PG
Analysis Projects Streptococcus pneumoniae R6M2-PG
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 2: High-Quality Draft
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454 GS FLX
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
40  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0013326
Organism Name
Streptococcus pneumoniae R6M2-PG  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
FIRMICUTES  
Genus
Streptococcus  
Genus Synonyms
  
Species
Streptococcus pneumoniae  
Subspecies
  
Species Synonyms
  
Strain
R6M2-PG  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1089300
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Firmicutes  
NCBI Class
Bacilli  
NCBI Order
Lactobacillales  
NCBI Family
Streptococcaceae  
NCBI Genus
Streptococcus  
NCBI Species
Streptococcus pneumoniae  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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