PROJECT INFORMATION
GOLD Project ID
Gp0013287  
Project Name
Soehngenia saccharolytica DSM 12858  
Other Names
  
Legacy ER Project ID
21057  
Legacy GOLD ID
Gi11909  
NCBI BioProject Name Soehngenia saccharolytica DSM 12858
NCBI BioProject ID 235108
NCBI BioProject Accession PRJNA235108
NCBI Locus Tag
BO51  
NCBI BioSample Accession SAMN02745800
PI Nikos Kyrpides
Added By JGI automated process on 2012-01-11
Last Modified By JGI automated process on 2019-04-29
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Tree of Life
GEBA-KMG
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute Leibniz Institute (Germany)
Funding Agency U.S. Department of Energy (DOE) (USA)
Leibniz Institute (Germany)
Project Description
  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX1761261
Experiment Title Soehngenia saccharolytica DSM 12858
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name TSUX
Library Layout SINGLE
Library Instrument ILLUMINA_HI_SEQ_2000
PROJECT COMPOSITION
Study Genomic Encyclopedia of Type Strains, Phase I: the one thousand microbial genomes (KMG-I) project
Organism Soehngenia saccharolytica DSM 12858
Analysis Projects Soehngenia saccharolytica DSM 12858
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal Level 1: Standard Draft
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina
Illumina HiSeq 2500
Illumina HiSeq 2000
Library Method (MIGS-28)
Illumina Regular Fragment, 300bp, Plates  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0013287
Organism Name
Soehngenia saccharolytica DSM 12858  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
FIRMICUTES  
Genus
Soehngenia  
Genus Synonyms
  
Species
Soehngenia saccharolytica  
Subspecies
  
Species Synonyms
  
Strain
DSM 12858  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
DSM 12858  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.4105  
Exemplar Name
Soehngenia saccharolytica  
Taxon DOI
10.1601/tx.4105  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1123260
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Firmicutes  
NCBI Class
Tissierellia  
NCBI Order
Tissierellales  
NCBI Family
Tissierellaceae  
NCBI Genus
Soehngenia  
NCBI Species
Soehngenia saccharolytica  
ISOLATION CLASSIFICATION
Ecosystem
Engineered  
Ecosystem Category
Biotransformation  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 371421
Genbank 16S ID AY353956
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
Rod-shaped  
Motility
  
Sporulation
Sporulating  
Temperature Range
Mesophile  
Temperature Optimum
30-37 C  
Salinity
  
pH
6.0-7.5  
Cell Diameter
0.5-0.7 um  
Cell Length
2.0-11.0 um  
Color
  
Gram Staining
Gram+  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Singles
Pairs
Chains
Diseases
  
Known Habitats Bioreactor
Metabolisms
  
Phenotypes Catalase negative
Energy Sources
  

 

 

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