PROJECT INFORMATION
GOLD Project ID
Gp0126972  
Project Name
Pseudonocardia eucalypti DSM 45351  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Pseudonocardia eucalypti DSM 45351
NCBI BioProject ID 347131
NCBI BioProject Accession PRJNA347131
NCBI Locus Tag
BKA01  
NCBI BioSample Accession SAMN05878463
PI Hans-Peter Klenk
Added By JGI automated process on 2016-01-07
Last Modified By JGI automated process on 2018-10-08
Project Comments
  
Project Status
incomplete  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Exploiting the genomes of the Actinobacteria: plant growth promoters and producers of natural products and energy relevant enzymes united in a taxonomically unresolved phylum  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
PROJECT COMPOSITION
Study Sequencing the genomes of 1000 actinobacteria strains
Organism Pseudonocardia eucalypti DSM 45351
Analysis Projects Pseudonocardia eucalypti DSM 45351
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status In progress
Sequencing Quality (MIGS-31) Level 3: Improved-High-Quality Draft
Finishing Goal Level 3: Improved-High-Quality Draft
Sequencing Comments
  
Sequencing Technology (MIGS-29) PacBio RS
PacBio Sequel
PacBio RS II
Library Method (MIGS-28)
PacBio >10kb w/ AMPure Bead Size Selection, Plates  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0029606
Organism Name
Pseudonocardia eucalypti DSM 45351  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
ACTINOBACTERIA  
Genus
Pseudonocardia  
Genus Synonyms
  
Species
Pseudonocardia eucalypti  
Subspecies
  
Species Synonyms
  
Strain
DSM 45351  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
DSM 45351  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.21279  
Exemplar Name
Pseudonocardia eucalypti DSM 45351  
Taxon DOI
10.1601/tx.21279  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 648755
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Actinobacteria  
NCBI Class
Actinobacteria  
NCBI Order
Pseudonocardiales  
NCBI Family
Pseudonocardiaceae  
NCBI Genus
Pseudonocardia  
NCBI Species
Pseudonocardia eucalypti  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Plants  
Ecosystem Type
Rhizoplane  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships Symbiotic
Symbiotic Physical Interaction
Endosymbiotic intracellular  
Symbiotic Relationship
Syntrophic  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Host
Plant root
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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