PROJECT INFORMATION
GOLD Project ID
Gp0012622  
Project Name
Paracoccus denitrificans SD1  
Other Names
  
Legacy ER Project ID
19947  
Legacy GOLD ID
Gc01972, Gi0019947  
NCBI BioProject Name Paracoccus denitrificans SD1 genome sequencing
NCBI BioProject ID 68425
NCBI BioProject Accession PRJNA68425
NCBI Locus Tag
PDI  
NCBI BioSample Accession SAMN02471795
PI Ahmed,N.
Added By Nikos Kyrpides on 2011-09-16
Last Modified By Jyothi Mallajosyula on 2014-05-08
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Evolution
Biotechnological
Bioremediation
Energy conservation
Sequencing Center University of Hyderabad (India)
Collaborating Institute
  
Funding Agency German Research Foundation (DFG) (Germany)
Project Description
The availability of a genome sequence and the subsequent follow-up work will shed further light on the diverse and unusual metabolic capabilities of P. denitrificans .  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications Journal of bacteriology 193(19):5598-9 Genome of a novel isolate of Paracoccus denitrificans capable of degrading N,N-dimethylformamide.
Other Publications
  
PROJECT COMPOSITION
Study Paracoccus denitrificans SD1
Organism Paracoccus denitrificans SD1
Analysis Projects Paracoccus denitrificans SD1
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 3: Improved-High-Quality Draft
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina GAIIx
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
65  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0012622
Organism Name
Paracoccus denitrificans SD1  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-ALPHA  
Genus
Paracoccus  
Genus Synonyms
  
Species
Paracoccus denitrificans  
Subspecies
  
Species Synonyms
  
Strain
SD1  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1051075
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Alphaproteobacteria  
NCBI Order
Rhodobacterales  
NCBI Family
Rhodobacteraceae  
NCBI Genus
Paracoccus  
NCBI Species
Paracoccus denitrificans  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Terrestrial  
Ecosystem Type
Geologic  
Ecosystem Subtype
Mine  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Coccus-shaped  
Motility
Nonmotile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
25 - 30  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Singles
Pairs
Clusters
Diseases None
Known Habitats Soil
Sewage plant
Metabolisms Stores polyhydroxybutyrate
Hydrogen oxidizer
Phenotypes
  
Energy Sources
  
CYANOBACTERIA METADATA
Filaments
  
Filament Type
  
Differentiated Cells
  
Position Of Heterocysts
  
Cysts
  
Mode Of Reproduction
  
Trichome
  
Trichome Type
  
Carotenoids
  
Pigments
  
Phage Infectivity
  
Phage Type
  
Restriction Enzyme
  
Toxin Production
  
Toxin Type
  
Secondary Metabolites
  
Developmental Cycle
  
Branching
  
Gas Vesicles
  
Gas Vesicle Type
  
Diagnostic Inclusion Body Information
  
Extracellular Structures
  
Bloom Forming
  
Pigment Type
  
Complementary chromatic adaptation (CCA)
  
Medium Types
  

 

 

  You are going to add the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  You are going to remove permissions for the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  Changing the SP visibility will also change visibility on the following items:

 

Do you want to continue with this visibility change?

 

 

  Checking that this Sequencing Project can be made private:

 

Do you want to continue with this visibility change?