PROJECT INFORMATION
GOLD Project ID
Gp0123554  
Project Name
Megasphaera elsdenii ATCC 25940  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Megasphaera elsdenii ATCC 25940
NCBI BioProject ID 334836
NCBI BioProject Accession PRJNA334836
NCBI Locus Tag
  
NCBI BioSample Accession SAMN05443622
PI Adam Guss
Added By JGI automated process on 2015-10-26
Last Modified By
Project Comments
  
Project Status
incomplete  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
PacBio sequencing to determine microbial DNA methylation  
Is JGI Project
  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Methylation  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study PacBio sequencing to determine microbial DNA methylation
Organism Megasphaera elsdenii ATCC 25940
Analysis Projects
  
Number of Analysis Projects 0
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) PacBio RS
PacBio RS II
Library Method (MIGS-28)
PacBio 2kb; PacBio >10kb w/ AMPure Bead Size Selection, Tubes  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0118400
Organism Name
Megasphaera elsdenii ATCC 25940  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
FIRMICUTES  
Genus
Megasphaera  
Genus Synonyms
  
Species
Megasphaera elsdenii  
Subspecies
  
Species Synonyms
  
Strain
ATCC 25940  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
ATCC 25940  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.4399  
Exemplar Name
Megasphaera elsdenii  
Taxon DOI
10.1601/tx.4399  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1064535
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Firmicutes  
NCBI Class
Negativicutes  
NCBI Order
Veillonellales  
NCBI Family
Veillonellaceae  
NCBI Genus
Megasphaera  
NCBI Species
Megasphaera elsdenii  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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