PROJECT INFORMATION
GOLD Project ID
Gp0122156  
Project Name
Mycoplasma mycoides capri GM12  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Mycoplasma mycoides subsp. capri GM12 isolate:YCpMmyc1.1-deltaglf
NCBI BioProject ID 285728
NCBI BioProject Accession PRJNA285728
NCBI Locus Tag
AB128  
NCBI BioSample Accession SAMN03758384
PI
Added By JGI automated process on 2015-10-15
Last Modified By Supratim Mukherjee on 2015-11-20
Project Comments
  
Project Status
Complete and Published  
Project Relevance Agricultural
Sequencing Center International Livestock Research Institute (Kenya)
Collaborating Institute
  
Funding Agency
  
Project Description
Using synthetic genomics to characterize virulence factors in Myoplasma mycoides. Here, we deleted the glf gene encoding UDP-galactopyranose mutase, the last enzyme of the galactofuranose biosynthesis pathway.  
Is JGI Project
  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX1046637
Experiment Title Raw genomic sequence data for a deletion mutant from Mycoplasma mycoides subsp. capri strain GM12, YCpMmyc1.1-deltaglf
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name PacBio SMRTbell
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
Spot Length 0
PROJECT COMPOSITION
Study Mutant Mycoplasma mycoides capri genome sequencing
Organism Mycoplasma mycoides capri GM12
Analysis Projects Mycoplasma mycoides capri GM12
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) PacBio RS
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0117222
Organism Name
Mycoplasma mycoides capri GM12  
Other names (alias, synonyms, short names, common names)
Mycoplasma mycoides subsp. capri strain GM12 clone YCpMmyc1.1-deltaglf,   
Organism Domain
BACTERIAL  
Phylogeny
TENERICUTES  
Genus
Mycoplasma  
Genus Synonyms
  
Species
Mycoplasma mycoides  
Subspecies
capri  
Species Synonyms
  
Strain
GM12  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 436113
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Tenericutes  
NCBI Class
Mollicutes  
NCBI Order
Mycoplasmatales  
NCBI Family
Mycoplasmataceae  
NCBI Genus
Mycoplasma  
NCBI Species
Mycoplasma mycoides  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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