PROJECT INFORMATION
GOLD Project ID
Gp0122097  
Project Name
Clostridium homopropionicum DSM 5847  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Clostridium homopropionicum DSM 5847
NCBI BioProject ID 292072
NCBI BioProject Accession PRJNA292072
NCBI Locus Tag
CLHOM  
NCBI BioSample Accession SAMN03964616
PI
Added By JGI automated process on 2015-10-15
Last Modified By Supratim Mukherjee on 2017-03-29
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Model Organism
Sequencing Center Goettingen Genomics Laboratory (Germany)
Georg-August-University Goettingen, Genomic and Applied Microbiology, Goettingen Genomics Laboratory
Collaborating Institute
  
Funding Agency
  
Project Description
Clostridium homopropionicum LuHBu1, (DSM 5847T), is a strictly anaerobic bacterium, which is performing a propionate fermentation and capable of growing with 2-, 3-, or 4 hydroxybutyrate as sole substrate.  
Is JGI Project
  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Clostridium homopropionicum DSM 5847 genome sequencing - Goettingen Genomics Laboratory
Organism Clostridium homopropionicum DSM 5847
Analysis Projects Clostridium homopropionicum DSM 5847
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0013556
Organism Name
Clostridium homopropionicum DSM 5847  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
FIRMICUTES  
Genus
Clostridium  
Genus Synonyms
  
Species
Clostridium homopropionicum  
Subspecies
  
Species Synonyms
  
Strain
DSM 5847  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
DSM 5847  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.3950  
Exemplar Name
Clostridium homopropionicum  
Taxon DOI
10.1601/tx.3950  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1121318
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Firmicutes  
NCBI Class
Clostridia  
NCBI Order
Clostridiales  
NCBI Family
Clostridiaceae  
NCBI Genus
Clostridium  
NCBI Species
Clostridium homopropionicum  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 115618
Genbank 16S ID X76744
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
Sporulating  
Temperature Range
Mesophile  
Temperature Optimum
37 C  
Salinity
  
pH
5.6-8.3  
Cell Diameter
1.2-1.5 um  
Cell Length
5.5-10.0 um  
Color
  
Gram Staining
Gram+  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Singles
Pairs
Diseases
  
Known Habitats Sludge
Metabolisms
  
Phenotypes
  
Energy Sources Chemoorganotroph

 

 

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