PROJECT INFORMATION
GOLD Project ID
Gp0121944  
Project Name
Elizabethkingia anophelis PW2806  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Genome sequencing of Elizabethkingia anophelis
NCBI BioProject ID 272791
NCBI BioProject Accession PRJEB5024
NCBI Locus Tag
AMN04  
NCBI BioSample Accession SAMEA3158465
PI
Added By JGI automated process on 2015-10-15
Last Modified By Supratim Mukherjee on 2017-03-29
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Medical
Sequencing Center University of Hong Kong (Hong Kong)
Collaborating Institute
  
Funding Agency
  
Project Description
Elizabethkingia anophelis, recently discovered from mosquito gut, is an emerging bacterium associated with neonatal meningitis and nosocomial outbreak. We describe three cases of E. anophelis sepsis with meningitis in two neonates and chorioamnionitis in a neonate‚Äôs mother. Draft genome sequencing of the three E. anophelis strains revealed evidence for perinatal vertical transmission to one neonate, and excluded a clonal outbreak. Our observations suggested maternal infection as a source of E. anophelis neonatal meningitis. The draft genome sequences were not only important in guiding infection control measures, but also allowed identification of potential novel antibiotic resistance and virulence genes in E. anophelis. This project is for isolate 1 of the larger 'umbrella' study.  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
PROJECT COMPOSITION
Study Genome sequencing of neonatal meningitis causing Elizabethkingia anophelis strains
Organism Elizabethkingia anophelis PW2806
Analysis Projects Elizabethkingia anophelis PW2806
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0117048
Organism Name
Elizabethkingia anophelis PW2806  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
BACTEROIDETES  
Genus
Elizabethkingia  
Genus Synonyms
  
Species
Elizabethkingia anophelis  
Subspecies
  
Species Synonyms
  
Strain
PW2806  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1358028
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Bacteroidetes  
NCBI Class
Flavobacteriia  
NCBI Order
Flavobacteriales  
NCBI Family
Flavobacteriaceae  
NCBI Genus
Elizabethkingia  
NCBI Species
Elizabethkingia anophelis  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

  You are going to add the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  You are going to remove permissions for the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  Changing the SP visibility will also change visibility on the following items:

 

Do you want to continue with this visibility change?

 

 

  Checking that this Sequencing Project can be made private:

 

Do you want to continue with this visibility change?