PROJECT INFORMATION
GOLD Project ID
Gp0121846  
Project Name
EM3 bacterium JGI MDM2 LHC4sed-1-H12  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name EM3 bacterium JGI MDM2 LHC4sed-1-H12
NCBI BioProject ID 373092
NCBI BioProject Accession PRJNA373092
NCBI Locus Tag
B0810  
NCBI BioSample Accession SAMN06320166
PI Ramunas Stepanauskas
Added By JGI automated process on 2015-10-12
Last Modified By JGI automated process on 2019-04-28
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Microbial Dark Matter project phase II - stepping deeper into unknown territory  
Is JGI Project
  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX2922032
Experiment Title EM3 bacterium JGI MDM2 LHC4sed-1-H12
Exp Library Strategy WGA
Library Source GENOMIC
Library Selection MDA
Library Name ASXWG
Library Layout PAIRED
Library Instrument ILLUMINA_MI_SEQ
PROJECT COMPOSITION
Study Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II)
Organism EM3 bacterium JGI MDM2 LHC4sed-1-H12
Analysis Projects EM3 bacterium JGI MDM2 LHC4sed-1-H12 (unscreened)
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal Level 1: Standard Draft
Sequencing Comments
21-CSP1477.MDM2.LHC4sed.SYBR.01.H12.S25_E03_023 ; 8/27/15-MHS-may have been a potential cross-contamination event when aliquoting samples in Rex's group  
Sequencing Technology (MIGS-29) Illumina MiSeq
Library Method (MIGS-28)
Production RnD, Tubes  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0116966
Organism Name
EM3 bacterium JGI MDM2 LHC4sed-1-H12  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
UNCLASSIFIED-BACTERIAL  
Genus
  
Genus Synonyms
  
Species
EM3 bacterium JGI MDM2 LHC4sed-1-H12  
Subspecies
  
Species Synonyms
  
Strain
JGI MDM2 LHC4sed-1-H12  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
No  
Culture Type
  
Organism Type
Natural  
Uncultured Type
Single Cell  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1955658
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Candidatus Hydrothermae  
NCBI Class
  
NCBI Order
  
NCBI Family
  
NCBI Genus
  
NCBI Species
Candidatus Hydrothermae bacterium JGI MDM2 LHC4sed-1-H12  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Thermal springs  
Ecosystem Subtype
Hot (42-90C)  
Specific Ecosystem
Sediment  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
Hyperthermophile  
Temperature Optimum
  
Salinity
  
pH
6.83  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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