PROJECT INFORMATION
GOLD Project ID
Gp0012183  
Project Name
Acidovorax sp. CF316  
Other Names
  
Legacy ER Project ID
5993  
Legacy GOLD ID
Gi17157  
NCBI BioProject Name Acidovorax sp. CF316
NCBI BioProject ID 83057
NCBI BioProject Accession PRJNA83057
NCBI Locus Tag
PMI14  
NCBI BioSample Accession SAMN00839625
PI Dale Pelletier
Added By Dale Pelletier on 2011-10-20
Last Modified By JGI automated process on 2014-03-26
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Rhizosphere
Agricultural
Sequencing Center Oak Ridge National Laboratory (USA)
Collaborating Institute
  
Funding Agency
  
Project Description
The Plant-Microbe Interfaces (PMI) project focuses on understanding the dynamic interface that exists between plants, microbes and their environment. A specific focus is on defining the genetic bases of molecular communication between Populus and its microbial consortia. Understanding the inherent chemical and physical processes involved will facilitate natural routes to the cycling and sequestration of carbon in terrestrial environments, ecosystem response to climate change, and the development and management of renewable energy sources  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications 23045501
Other Publications
  
PROJECT COMPOSITION
Study Plant-Microbe Interfaces
Organism Acidovorax sp. CF316
Analysis Projects Acidovorax sp. CF316
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 2: High-Quality Draft
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina HiSeq 2000
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
67  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0012183
Organism Name
Acidovorax sp. CF316  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-BETA  
Genus
Acidovorax  
Genus Synonyms
  
Species
Acidovorax sp. CF316  
Subspecies
  
Species Synonyms
  
Strain
CF316  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1144317
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Betaproteobacteria  
NCBI Order
Burkholderiales  
NCBI Family
Comamonadaceae  
NCBI Genus
Acidovorax  
NCBI Species
Acidovorax sp. CF316  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Plants  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Root nodule
Host
Metabolisms
  
Phenotypes
  
Energy Sources Heterotroph

 

 

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