PROJECT INFORMATION
GOLD Project ID
Gp0120986  
Project Name
Clostridium sporogenes DSM 795  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Clostridium sporogenes strain:DSM 795
NCBI BioProject ID 285281
NCBI BioProject Accession PRJNA285281
NCBI Locus Tag
CLSPOx  
NCBI BioSample Accession SAMN03742637
PI
Added By JGI automated process on 2015-09-09
Last Modified By Michelle Isbandi on 2015-10-13
Project Comments
  
Project Status
Complete and Published  
Project Relevance Model Organism
Sequencing Center Okinawa Institute of Science and Technology (Japan)
Collaborating Institute
  
Funding Agency
  
Project Description
Complete Genome sequencing of Clostridium sporogenes  
Is JGI Project
  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications Standards in genomic sciences Genome sequence of Clostridium sporogenes DSM 795(T), an amino acid-degrading, nontoxic surrogate of neurotoxin-producing Clostridium botulinum.
Other Publications
  
PROJECT COMPOSITION
Study Clostridium sporogenes DSM 795
Organism Clostridium sporogenes DSM 795
Analysis Projects Clostridium sporogenes DSM 795
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina GAIIx
454 GS FLX Titanium
Illumina MiSeq
Library Method (MIGS-28)
  
Number Of Reads
4106655  
Read Size
  
Vector
  
GC Percent
28  
Chromosome Count
1  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0116562
Organism Name
Clostridium sporogenes DSM 795  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
FIRMICUTES  
Genus
Clostridium  
Genus Synonyms
  
Species
Clostridium sporogenes  
Subspecies
  
Species Synonyms
  
Strain
DSM 795  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
DSM 795  
Type Strain
  
Exemplar DOI
10.1601/ex.4021  
Exemplar Name
Clostridium sporogenes  
Taxon DOI
10.1601/tx.4021  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1509
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Firmicutes  
NCBI Class
Clostridia  
NCBI Order
Clostridiales  
NCBI Family
Clostridiaceae  
NCBI Genus
Clostridium  
NCBI Species
Clostridium sporogenes  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Human  
Ecosystem Type
Digestive system  
Ecosystem Subtype
Large intestine  
Specific Ecosystem
Fecal  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
Rod-shaped  
Motility
  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
30-40C  
Salinity
  
pH
  
Cell Diameter
1.3 μm  
Cell Length
16.0 μm  
Color
  
Gram Staining
Gram+  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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