PROJECT INFORMATION
GOLD Project ID
Gp0119154  
Project Name
Halocynthiibacter arcticus PAMC 20958  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Halocynthiibacter arcticus strain:PAMC 20958
NCBI BioProject ID 269208
NCBI BioProject Accession PRJNA269208
NCBI Locus Tag
RC74  
NCBI BioSample Accession SAMN03252591
PI
Added By JGI automated process on 2015-07-15
Last Modified By Galina Ovchinnikova on 2017-05-12
Project Comments
  
Project Status
Complete and Published  
Project Relevance Environmental
Sequencing Center Korea Polar Research Institute (KOPRI) (South Korea)
Collaborating Institute
  
Funding Agency
  
Project Description
to confirm of novel bacteria  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications Journal of biotechnology Complete genome sequence of Halocynthiibacter arcticus PAMC 20958(T) from an Arctic marine sediment sample.
Other Publications
  
PROJECT COMPOSITION
Study Halocynthiibacter arcticus PAMC 20958
Organism Halocynthiibacter arcticus PAMC 20958
Analysis Projects Halocynthiibacter arcticus PAMC 20958
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) PacBio RS
Library Method (MIGS-28)
PacBio RSII 20-kb insert library  
Number Of Reads
  
Read Size
4329554  
Vector
  
GC Percent
53  
Chromosome Count
1  
Plasmid Count
1  
ORGANISM NAME
GOLD Organism ID Go0115216
Organism Name
Halocynthiibacter arcticus PAMC 20958  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-ALPHA  
Genus
Halocynthiibacter  
Genus Synonyms
  
Species
Halocynthiibacter arcticus  
Subspecies
  
Species Synonyms
  
Strain
PAMC 20958  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
JCM 30530  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1579316
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Alphaproteobacteria  
NCBI Order
Rhodobacterales  
NCBI Family
Rhodobacteraceae  
NCBI Genus
Halocynthiibacter  
NCBI Species
Halocynthiibacter arcticus  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Rod-shaped  
Motility
  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
21 C  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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