PROJECT INFORMATION
GOLD Project ID
Gp0118832  
Project Name
Flavobacterium sp. MEB061  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Flavobacterium sp. MEB061
NCBI BioProject ID 270642
NCBI BioProject Accession PRJNA270642
NCBI Locus Tag
RT99  
NCBI BioSample Accession SAMN03267948
PI
Added By JGI automated process on 2015-07-15
Last Modified By Supratim Mukherjee on 2017-03-29
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Environmental
Sequencing Center University of Chicago (USA)
Collaborating Institute
  
Funding Agency
  
Project Description
Isolated in culture-based survey of leaf endophytes from Arabidopsis thaliana in the Midwestern United States  
Is JGI Project
  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX825310
Experiment Title Mate paired end reads for MEB061
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name MEB061mp
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
Spot Length 202
PROJECT COMPOSITION
Study Genome sequencing of cultured microbial strains from phyllosphere of Arabidopsis thaliana
Organism Flavobacterium sp. MEB061
Analysis Projects Flavobacterium sp. MEB061
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina HiSeq
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0114904
Organism Name
Flavobacterium sp. MEB061  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
BACTEROIDETES  
Genus
Flavobacterium  
Genus Synonyms
  
Species
Flavobacterium sp. MEB061  
Subspecies
  
Species Synonyms
  
Strain
MEB061  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1587524
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Bacteroidetes  
NCBI Class
Flavobacteriia  
NCBI Order
Flavobacteriales  
NCBI Family
Flavobacteriaceae  
NCBI Genus
Flavobacterium  
NCBI Species
Flavobacterium sp. MEB061  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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