PROJECT NAME
GOLD Project ID
Gp0118628  
Project Name
Pseudomonas sp. DR 5-09  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Pseudomonas sp. genome sequencing
NCBI BioProject ID 284318
NCBI BioProject Accession PRJNA284318
NCBI Locus Tag
PDR5  
NCBI BioSample Accession SAMN03701340
PI Ji-Hye Han
Added By Ji-Hye Han on 2015-07-07
Last Modified By Ji-Hye Han on 2015-07-07
Project Comments
Endophytic Pseudomonas sp.  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center Chunlab
Collaborating Institute Chungnam National University (South Korea)
Funding Agency
  
Project Description
Genome sequencing of root endophytic Pseudomoans sp.  
Project Information Visibility Public
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
PROJECT COMPOSITION
Study Genome sequencing of endophytic Pseudomonas species
Analysis Projects Pseudomonas sp. DR 5-09
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal Level 6: Finished
Sequencing Comments
  
Sequencing Technology (MIGS-29) PacBio RS
Library Method (MIGS-28)
PacBio_20K  
Number Of Reads
77997  
Read Size
  
Vector
  
GC Percent
60  
Chromosome Count
  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0114791
Organism Name
Pseudomonas sp. DR 5-09  
Other names (alias, synonyms, short names, common names)
DR 5-09  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Pseudomonas  
Genus Synonyms
  
Species
Pseudomonas sp. DR 5-09  
Subspecies
  
Species Synonyms
  
Strain
DR 5-06  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1534110
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Gammaproteobacteria  
NCBI Order
Pseudomonadales  
NCBI Family
Pseudomonadaceae  
NCBI Genus
Pseudomonas  
NCBI Species
Pseudomonas sp. DR 5-09  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Microbial  
Ecosystem Type
Bacteria  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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