PROJECT INFORMATION
GOLD Project ID
Gp0011846  
Project Name
Candidatus Arthromitus sp. SFB-4  
Other Names
  
Legacy ER Project ID
5035  
Legacy GOLD ID
Gi09905  
NCBI BioProject Name Symbiotic lifestyle of segmented filamentous bacteria (SFB) revealed by single-cell genomics: SFB-4.
NCBI BioProject ID 69905
NCBI BioProject Accession PRJNA69905
NCBI Locus Tag
SFB4  
NCBI BioSample Accession SAMN00631070
PI
Added By JGI automated process on 2011-07-14
Last Modified By JGI automated process on 2014-03-26
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Medical
Sequencing Center Stanford University (USA)
Collaborating Institute
  
Funding Agency
  
Project Description
Isolation of five individual segmented filamentous bacteria (SFB, Candidatus Arthromitus, Clostridiaceae) filaments from a fecal sample from a BALB/c SFB-monocolonized mouse on a microfluidic chip using laser-tweezers. Cells were lyzed, their genomes amplified, and sequenced. Assemblies were obtained for each individual SFB metagenome, and a co-assembly was obtained based on combining the reads from the five individual metagenomes  
Is JGI Project
  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications Genome research 22(6):1107-19 Single-cell sequencing provides clues about the host interactions of segmented filamentous bacteria (SFB).
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX202947
Experiment Title 454 sequencing from individual filament of segmented filamentous bacteria SFB-4
Exp Library Strategy WGA
Library Source GENOMIC
Library Selection other
Library Layout SINGLE
Library Instrument 454 GS FLX Titanium
Spot Length 0
PROJECT COMPOSITION
Study Symbiotic lifestyle of segmented filamentous bacteria (SFB) revealed by single-cell genomics
Organism Candidatus Arthromitus sp. SFB-4
Analysis Projects Candidatus Arthromitus sp. SFB-4 (unscreened)
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454 GS FLX Titanium
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
28  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0011846
Organism Name
Candidatus Arthromitus sp. SFB-4  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
FIRMICUTES  
Genus
  
Genus Synonyms
  
Species
Candidatus Arthromitus sp. SFB-4  
Subspecies
  
Species Synonyms
  
Strain
SFB-4  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
No  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
No  
Culture Type
  
Organism Type
Natural  
Uncultured Type
Single Cell  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1054945
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Firmicutes  
NCBI Class
Clostridia  
NCBI Order
Clostridiales  
NCBI Family
Clostridiaceae  
NCBI Genus
Candidatus Arthromitus  
NCBI Species
Candidatus Arthromitus sp. SFB-4  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Mammals  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
Filament-shaped  
Motility
  
Sporulation
Sporulating  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Host
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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