PROJECT INFORMATION
GOLD Project ID
Gp0118062  
Project Name
Mycoplasma mycoides ssp. mycoides Afade  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Mycoplasma mycoides subsp. mycoides
NCBI BioProject ID 272775
NCBI BioProject Accession PRJNA272775
NCBI Locus Tag
TS60  
NCBI BioSample Accession SAMN03286960
PI
Added By JGI automated process on 2015-07-02
Last Modified By Mahrukh Mujeeb on 2017-07-07
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Agricultural
Sequencing Center International Livestock Research Institute (Kenya)
Collaborating Institute
  
Funding Agency
  
Project Description
Members of the ‘Mycoplasma mycoides cluster’ represent important livestock pathogens worldwide. Mycoplasma mycoides subsp. mycoides is the aetiologic agent of Contagious Bovine Pleuropneumonia (CBPP) in cattle and is still endemic in many parts of Africa. We report the genome sequences of the frequently used challenge strains Mycoplasma mycoides subsp. mycoides Afadé  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications Standards in genomic sciences High quality draft genomes of the Mycoplasma mycoides subsp. mycoides challenge strains Afadé and B237.
Other Publications
  
PROJECT COMPOSITION
Study Mycoplasma mycoides ssp. mycoides Afade
Organism Mycoplasma mycoides mycoides Afade
Analysis Projects Mycoplasma mycoides ssp. mycoides Afade
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) PacBio RS
Illumina MiSeq
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
1190241  
Vector
  
GC Percent
24  
Chromosome Count
1  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0114302
Organism Name
Mycoplasma mycoides mycoides Afade  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
TENERICUTES  
Genus
Mycoplasma  
Genus Synonyms
  
Species
Mycoplasma mycoides  
Subspecies
  
Species Synonyms
  
Strain
Afade  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 2103
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Tenericutes  
NCBI Class
Mollicutes  
NCBI Order
Mycoplasmatales  
NCBI Family
Mycoplasmataceae  
NCBI Genus
Mycoplasma  
NCBI Species
Mycoplasma mycoides  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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