PROJECT INFORMATION
GOLD Project ID
Gp0011585  
Project Name
Pseudomonas chlororaphis aureofaciens 30-84  
Other Names
  
Legacy ER Project ID
5388  
Legacy GOLD ID
Gi10258  
NCBI BioProject Name Pseudomonas chlororaphis subsp. aureofaciens 30-84
NCBI BioProject ID 67533
NCBI BioProject Accession PRJNA67533
NCBI Locus Tag
PCHL30  
NCBI BioSample Accession
PI Joyce Loper
Added By JGI automated process on 2011-07-14
Last Modified By JGI automated process on 2014-03-26
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Comparative analysis
Sequencing Center U.S. Department of Agriculture (France)
Collaborating Institute Texas A and M University (USA)
Macquarie University (Australia)
J. Craig Venter Institute (JCVI) (USA)
Funding Agency
  
Project Description
bacterial cells grown in pure culture. P. chlororaphis strain 30-84 was isolated from a root of wheat grown in Kansas, USA, and is known to suppress the plant disease take-all of wheat caused by the root-infecting fungus Gaeumannomyces graminis var. tritici (PMID:1325219). P. chlororaphis 30-84 produces phenazine antibiotics, is a valuable model strain in studies on quorum sensing and communication among bacteria in natural habitats (PMID:20352425, 18944379)  
Is JGI Project
  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications PLoS genetics 8(7):e1002784 Comparative genomics of plant-associated Pseudomonas spp.: insights into diversity and inheritance of traits involved in multitrophic interactions.
Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Pseudomonas chlororaphis aureofaciens 30-84
Organism Pseudomonas chlororaphis aureofaciens 30-84
Analysis Projects Pseudomonas chlororaphis aureofaciens 30-84
Number of Analysis Projects 1
Number of DAPs
6  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 2: High-Quality Draft
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Sanger
454
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
63  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0011585
Organism Name
Pseudomonas chlororaphis aureofaciens 30-84  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Pseudomonas  
Genus Synonyms
  
Species
Pseudomonas chlororaphis  
Subspecies
aureofaciens  
Species Synonyms
  
Strain
30-84  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
No  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1038921
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Gammaproteobacteria  
NCBI Order
Pseudomonadales  
NCBI Family
Pseudomonadaceae  
NCBI Genus
Pseudomonas  
NCBI Species
Pseudomonas chlororaphis  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Plants  
Ecosystem Type
Rhizoplane  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
28  
Salinity
  
pH
7.0-7.5  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Singles
Diseases None
Known Habitats Soil
Metabolisms
  
Phenotypes
  
Energy Sources Heterotroph

 

 

  You are going to add the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  You are going to remove permissions for the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  Changing the SP visibility will also change visibility on the following items:

 

Do you want to continue with this visibility change?

 

 

  Checking that this Sequencing Project can be made private:

 

Do you want to continue with this visibility change?