PROJECT INFORMATION
GOLD Project ID
Gp0011584  
Project Name
Pseudomonas chlororaphis O6  
Other Names
  
Legacy ER Project ID
5387  
Legacy GOLD ID
Gi10257  
NCBI BioProject Name Pseudomonas chlororaphis O6
NCBI BioProject ID 67531
NCBI BioProject Accession PRJNA67531
NCBI Locus Tag
PCHLO6  
NCBI BioSample Accession SAMN02436415
PI
Added By JGI automated process on 2011-07-14
Last Modified By Alejandro Rodriguez Mojica on 2018-07-11
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Antibiotic production
Agricultural
Sequencing Center Macquarie University (Australia)
U.S. Department of Agriculture (France)
J. Craig Venter Institute (JCVI) (USA)
Utah State University
Collaborating Institute
  
Funding Agency
  
Project Description
Pseudomonas chlororaphis O6 was isolated from the soil in Utah, USA (DOI: 10.1007/BF00336064). The bacterium colonizes the rhizosphere and protects plants from biotic and abiotic stresses by producing antibiotics toxic to plant pathogens and metabolites (such as 2R,3R-butanediol) that induce systemic tolerance in the plant (PMID:18616403, 180512680).  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications PLoS genetics 8(7):e1002784 Comparative genomics of plant-associated Pseudomonas spp.: insights into diversity and inheritance of traits involved in multitrophic interactions.
Other Publications
  
PROJECT COMPOSITION
Study Pseudomonas chlororaphis O6
Organism Pseudomonas chlororaphis O6
Analysis Projects Pseudomonas chlororaphis O6
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 2: High-Quality Draft
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
63  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0040247
Organism Name
Pseudomonas chlororaphis O6  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Pseudomonas  
Genus Synonyms
  
Species
Pseudomonas chlororaphis  
Subspecies
  
Species Synonyms
  
Strain
O6  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
No  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1037915
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Gammaproteobacteria  
NCBI Order
Pseudomonadales  
NCBI Family
Pseudomonadaceae  
NCBI Genus
Pseudomonas  
NCBI Species
Pseudomonas chlororaphis  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Terrestrial  
Ecosystem Type
Soil  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
  
Motility
Motile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
28  
Salinity
  
pH
6.3 - 7.5  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Soil
Rhizosphere
Metabolisms
  
Phenotypes
  
Energy Sources Heterotroph

 

 

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