PROJECT INFORMATION
GOLD Project ID
Gp0011250  
Project Name
Thalassobacter stenotrophicus DSM 16310  
Other Names
  
Legacy ER Project ID
21140  
Legacy GOLD ID
Gi11992  
NCBI BioProject Name Thalassobacter stenotrophicus DSM 16310
NCBI BioProject ID 245735
NCBI BioProject Accession PRJNA245735
NCBI Locus Tag
EK10  
NCBI BioSample Accession SAMN02744035
PI Nikos Kyrpides
Added By JGI automated process on 2012-01-11
Last Modified By JGI automated process on 2018-10-08
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Tree of Life
GEBA-KMG
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Genomic Encyclopedia of Type Strains, Phase I: one thousand microbial genomes (KMG) project. The goal of the Genomic Encyclopedia of Bacteria and Archaea (GEBA) initiative is to sequence genomes to fill phylogenetic gaps, generating reference genomes for every major and minor group of bacteria and archaea. Currently sequenced genomes have provided highly uneven coverage of the type strain material present in public culture collections. The Microbial Earth Project is an initiative of the Microbial Genomics Program of the DOE Joint Genome Institute that focuses on 1000 Type strains from the DSMZ and ATCC repositories.  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
PROJECT COMPOSITION
Study Genomic Encyclopedia of Type Strains, Phase I: the one thousand microbial genomes (KMG-I) project
Organism Thalassobacter stenotrophicus DSM 16310
Analysis Projects Thalassobacter stenotrophicus DSM 16310
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal Level 1: Standard Draft
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina HiSeq 2500
Illumina HiSeq 2000
Library Method (MIGS-28)
Illumina Regular Fragment, 300bp, Plates  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0011250
Organism Name
Thalassobacter stenotrophicus DSM 16310  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-ALPHA  
Genus
Thalassobacter  
Genus Synonyms
  
Species
Thalassobacter stenotrophicus  
Subspecies
  
Species Synonyms
  
Strain
DSM 16310  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
DSM 16310  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.8882  
Exemplar Name
Thalassobacter stenotrophicus  
Taxon DOI
10.1601/tx.8882  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1123361
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Alphaproteobacteria  
NCBI Order
Rhodobacterales  
NCBI Family
Rhodobacteraceae  
NCBI Genus
Thalassobacter  
NCBI Species
Thalassobacter stenotrophicus  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Marine  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Marine
Aquatic
Sea water
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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