PROJECT INFORMATION
GOLD Project ID
Gp0011073  
Project Name
Mogibacterium sp. CM50  
Other Names
  
Legacy ER Project ID
2565  
Legacy GOLD ID
Gi09673  
NCBI BioProject Name Mogibacterium sp. CM50
NCBI BioProject ID 78583
NCBI BioProject Accession PRJNA78583
NCBI Locus Tag
HMPREF1152  
NCBI BioSample Accession SAMN00828794
PI Dodson R.
Added By Konstantinos Liolios on 2011-06-22
Last Modified By JGI automated process on 2014-03-26
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Human Microbiome Project (HMP)
Medical
Sequencing Center J. Craig Venter Institute (JCVI) (USA)
Collaborating Institute
  
Funding Agency NIH (USA)
Project Description
HMP reference genome  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX129949  (Link to NCBI )
Experiment Title 1132520054063 HMP279 Mogibacterium sp. strain CM50 HMP279-PE-ILI66-1 Experiment
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name HMP279-PE-ILI66-1
Library Layout PAIRED
Library Instrument ILLUMINA_GENOME_ANALYZER_II
Spot Length 200
PROJECT COMPOSITION
Study Human Microbiome Project (HMP) Reference Genomes
Organism Mogibacterium sp. CM50
Analysis Projects Mogibacterium sp. CM50
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 2: High-Quality Draft
Finishing Goal Level 2: High-Quality Draft
Contamination Screening Input
  
DNA Amplification Method
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina HiSeq 2000
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
643260  
Read Size
  
Vector
  
GC Percent
44  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0011073
Organism Name
Mogibacterium sp. CM50  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
FIRMICUTES  
Genus
Mogibacterium  
Genus Synonyms
  
Species
Mogibacterium sp. CM50  
Subspecies
  
Species Synonyms
  
Strain
CM50  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
BEI HM-769  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 936375
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Firmicutes  
NCBI Class
Clostridia  
NCBI Order
Eubacteriales  
NCBI Family
Clostridiales Family XIII. Incertae Sedis  
NCBI Genus
Mogibacterium  
NCBI Species
Mogibacterium sp. CM50  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Human  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources Heterotroph
HMP METADATA
HMP ID
1152  
Show in DACC?
Yes  
HMP Project Status
Complete  
BEI Status
  
NCBI Submission Status
6. annotation (and sequence) public on NCBI site  
Isolate Suggestion Source
  
HMP Isolation Body Sample Site
Oral  
HMP Isolation Body Sample Subsite
  
HMP Finishing Goal
  
Source, Sample & Medical Relevance Comments
  
Isolate Availability Comments
  
Project Comments
  
DNA Received
Yes  
Date DNA Received
2011-06-02  
Date Sequencing Begins
2011-06-20  
Date Draft Sequencing Completed
2011-09-07  
Cross Reference ID
  

 

 

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