PROJECT INFORMATION
GOLD Project ID
Gp0110122  
Project Name
Thermus aquaticus Y51MC23  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Thermus aquaticus Genome Sequencing
NCBI BioProject ID
NCBI BioProject Accession PRJNA274060
NCBI Locus Tag
TO73  
NCBI BioSample Accession
PI Scott Monsma
Added By Scott Monsma on 2015-02-02
Last Modified By
Project Comments
  
Project Status
Complete and Published  
Project Relevance
  
Sequencing Center Lucigen
Collaborating Institute
  
Funding Agency
  
Project Description
Thermus aquaticus Y51MC23 Genome Sequencing  
Is JGI Project
  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Thermus aquaticus Y51MC23
Organism Thermus aquaticus Y51MC23
Analysis Projects Thermus aquaticus Y51MC23
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal Level 6: Finished
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina
Illumina MiSeq
Library Method (MIGS-28)
Fragment and Lucigen NxSeq Long Span Mate Pair  
Number Of Reads
2093460  
Read Size
2x 250  
Vector
  
GC Percent
68  
Chromosome Count
1  
Plasmid Count
4  
ORGANISM NAME
GOLD Organism ID Go0000004
Organism Name
Thermus aquaticus Y51MC23  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
DEINOCOCCUS-THERMUS  
Genus
Thermus  
Genus Synonyms
  
Species
Thermus aquaticus  
Subspecies
  
Species Synonyms
  
Strain
Y51MC23  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 498848
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Deinococcus-Thermus  
NCBI Class
Deinococci  
NCBI Order
Thermales  
NCBI Family
Thermaceae  
NCBI Genus
Thermus  
NCBI Species
Thermus aquaticus  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Thermal springs  
Ecosystem Subtype
Hot (42-90C)  
Specific Ecosystem
Alkaline  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
Obligate aerobe  
Cell Shape
Rod-shaped  
Motility
Nonmotile  
Sporulation
Nonsporulating  
Temperature Range
Thermophile  
Temperature Optimum
70-93 C  
Salinity
  
pH
7.5 - 7.8  
Cell Diameter
  
Cell Length
  
Color
Yellow  
Gram Staining
Gram-  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Filaments
Diseases None
Known Habitats Hot spring
Fresh water
Metabolisms
  
Phenotypes
  
Energy Sources Chemosynthetic

 

 

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