PROJECT INFORMATION
GOLD Project ID
Gp0010913  
Project Name
Yersinia pestis PY-60  
Other Names
  
Legacy ER Project ID
19500  
Legacy GOLD ID
Gi09500  
NCBI BioProject Name Yersinia pestis PY-60
NCBI BioProject ID 64349
NCBI BioProject Accession PRJNA64349
NCBI Locus Tag
YPPY60  
NCBI BioSample Accession SAMN02141482
PI
Added By Ionna Pagani on 2011-04-13
Last Modified By JGI automated process on 2014-10-31
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Animal Pathogen
Biothreat
Human Pathogen
Medical
Sequencing Center University of Maryland School of Medicine (USA)
Collaborating Institute
  
Funding Agency
  
Project Description
Yersinia pestis PY-60 Genome sequencing project  
Is JGI Project
  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Genome sequence of Yersinia Pestis
Organism Yersinia pestis PY-60
Analysis Projects Yersinia pestis PY-60
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
47  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0010913
Organism Name
Yersinia pestis PY-60  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Yersinia  
Genus Synonyms
  
Species
Yersinia pestis  
Subspecies
  
Species Synonyms
  
Strain
PY-60  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 992161
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Gammaproteobacteria  
NCBI Order
Enterobacterales  
NCBI Family
Yersiniaceae  
NCBI Genus
Yersinia  
NCBI Species
Yersinia pestis  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Mammals  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
Facultative  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
37  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Singles
Diseases Bubonic and Pneumonic plague
Known Habitats Host
Metabolisms
  
Phenotypes Pathogen
Energy Sources Heterotroph

 

 

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