PROJECT INFORMATION
GOLD Project ID
Gp0010460  
Project Name
Oscillatoriales cyanobacterium JSC-12  
Other Names
  
Legacy ER Project ID
19146  
Legacy GOLD ID
Gi09136  
NCBI BioProject Name Oscillatoriales cyanobacterium JSC-12
NCBI BioProject ID 66005
NCBI BioProject Accession PRJNA66005
NCBI Locus Tag
Osccy  
NCBI BioSample Accession SAMN02261267
PI Igor Brown
Added By Nikos Kyrpides on 2011-03-05
Last Modified By Supratim Mukherjee on 2020-10-22
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Environmental
Biotechnological
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Oscillatoriales cyanobacterium JSC-12 genome sequencing project.  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Genome Publications
  
Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Genome sequence analysis of two strains of Cyanobacteria for biological remediation
Organism Oscillatoriales cyanobacterium JSC-12
Analysis Projects Oscillatoriales cyanobacterium JSC-12
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 3: Improved-High-Quality Draft
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) 454 GS FLX Titanium
Illumina HiSeq 2000
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
47  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0010460
Organism Name
Oscillatoriales cyanobacterium JSC-12  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
CYANOBACTERIA  
Genus
  
Genus Synonyms
  
Species
Oscillatoriales cyanobacterium C42_A2020_001  
Subspecies
  
Species Synonyms
  
Strain
JSC-12  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 864702
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Cyanobacteria  
NCBI Class
  
NCBI Order
Synechococcales  
NCBI Family
Leptolyngbyaceae  
NCBI Genus
  
NCBI Species
Leptolyngbyaceae cyanobacterium JSC-12  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
Mesophile  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Fresh water
Metabolisms
  
Phenotypes
  
Energy Sources Photosynthetic

 

 

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