PROJECT INFORMATION
GOLD Project ID
Gp0010409  
Project Name
Roseobacter sp. LE17  
Other Names
  
Legacy ER Project ID
1971  
Legacy GOLD ID
Gi0001971  
NCBI BioProject Name
  
NCBI BioProject ID
NCBI BioProject Accession
NCBI Locus Tag
  
NCBI BioSample Accession
PI Xavier Mayali
Added By Xavier Mayali on 2011-02-25
Last Modified By Nikos Kyrpides on 2013-11-09
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Ocean carbon cycle
Algicidal
Ecological
Sequencing Center
  
Collaborating Institute Los Alamos National Laboratory (USA)
Funding Agency
  
Project Description
  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Roseobacter sp. LE17
Organism Roseobacter sp. LE17
Analysis Projects Roseobacter sp. LE17
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina
Library Method (MIGS-28)
Illumina  
Number Of Reads
67312981  
Read Size
  
Vector
  
GC Percent
54  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0010409
Organism Name
Roseobacter sp. LE17  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-ALPHA  
Genus
Roseobacter  
Genus Synonyms
  
Species
Roseobacter sp. LE17  
Subspecies
  
Species Synonyms
  
Strain
LE17  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 452981
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Alphaproteobacteria  
NCBI Order
Rhodobacterales  
NCBI Family
Rhodobacteraceae  
NCBI Genus
Roseobacter  
NCBI Species
Roseobacter sp. LE17  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Marine  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
Facultative  
Cell Shape
Rod-shaped  
Motility
Nonmotile  
Sporulation
Nonsporulating  
Temperature Range
Psychrotrophic  
Temperature Optimum
20C  
Salinity
Euryhaline  
pH
  
Cell Diameter
  
Cell Length
  
Color
Red  
Gram Staining
Gram-  
Biotic Relationships Symbiotic
Symbiotic Physical Interaction
Exosymbiotic  
Symbiotic Relationship
Parasitic  
Symbiont Name
Lingulodinium polyedrum  
Symbiont Taxon ID
160621  
Cell Arrangements Singles
Clusters
Diseases
  
Known Habitats Marine water
Marine
Host
Surface water
Metabolisms Carbon fixation
Phenotypes Biofilm
Facultative parasite
Algicidal
Energy Sources Photoheterotroph
CYANOBACTERIA METADATA
Filaments
  
Filament Type
  
Differentiated Cells
  
Position Of Heterocysts
  
Cysts
  
Mode Of Reproduction
  
Trichome
  
Trichome Type
  
Carotenoids
  
Pigments
  
Phage Infectivity
  
Phage Type
  
Restriction Enzyme
  
Toxin Production
  
Toxin Type
  
Secondary Metabolites
  
Developmental Cycle
  
Branching
  
Gas Vesicles
  
Gas Vesicle Type
  
Diagnostic Inclusion Body Information
  
Extracellular Structures
  
Bloom Forming
  
Pigment Type
  
Complementary chromatic adaptation (CCA)
  
Medium Types
  

 

 

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