PROJECT NAME
GOLD Project ID
Gp0103663  
Project Name
Nitrospira marina Nb-295  
Other Names
  
Legacy ER Project ID
77747  
Legacy GOLD ID
Gi0077747  
NCBI BioProject Name Nitrospira marina Nb-295
NCBI BioProject ID 262287
NCBI BioProject Accession PRJNA262287
NCBI Locus Tag
LX98  
NCBI BioSample Accession SAMN05660474
PI Chris L. Dupont
Added By JGI automated process on 2014-08-25
Last Modified By JGI automated process on 2014-09-04
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Functional genomics of an oxygen minimum zone in the mesopelagic equatorial Pacific  
Project Information Visibility Public
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
PROJECT COMPOSITION
Study Functional genomics of an oxygen minimum zone in the mesopelagic equatorial Pacific
Analysis Projects Nitrospira marina Nb-295
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 3: Improved-High-Quality Draft
Finishing Goal Level 3: Improved-High-Quality Draft
Sequencing Comments
  
Sequencing Technology (MIGS-29) PacBio RS
PacBio RS II
Library Method (MIGS-28)
PacBio 10kb  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0001690
Organism Name
Nitrospira marina Nb-295  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
NITROSPIRAE  
Genus
Nitrospira  
Genus Synonyms
  
Species
Nitrospira marina  
Subspecies
  
Species Synonyms
  
Strain
Nb-295  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 314229
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Nitrospirae  
NCBI Class
Nitrospira  
NCBI Order
Nitrospirales  
NCBI Family
Nitrospiraceae  
NCBI Genus
Nitrospira  
NCBI Species
Nitrospira marina  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Marine  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Marine
Surface water
Metabolisms Nitrite-oxidizer
Phenotypes
  
Energy Sources
  

 

 

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