PROJECT INFORMATION
GOLD Project ID
Gp0103178  
Project Name
Clostridium beijerinckii 59B  
Other Names
59B  
Legacy ER Project ID
77515  
Legacy GOLD ID
  
NCBI BioProject Name Clostridium beijerinckii strain:59B
NCBI BioProject ID 260606
NCBI BioProject Accession PRJNA260606
NCBI Locus Tag
LF65  
NCBI BioSample Accession SAMN03024437
PI G2L Team
Added By G2L Team on 2014-08-19
Last Modified By Supratim Mukherjee on 2016-01-18
Project Comments
  
Project Status
Complete and Published  
Project Relevance Biofuels
Sequencing Center Goettingen Genomics Laboratory (Germany)
Collaborating Institute
  
Funding Agency
  
Project Description
comparison solventogenic clostridia  
Is JGI Project
  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid
  
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications Genome announcements Genome Sequence of the Solvent-Producing Clostridium beijerinckii Strain 59B, Isolated from Staffordshire Garden Soil.

Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX1156203
Experiment Title NCIMB 14988 454 reads
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection unspecified
Library Name 454 reads
Library Layout SINGLE
Library Instrument 454 GS FLX
Spot Length 0
 
SRA Experiment Id SRX1156202
Experiment Title NCIMB 14988 Illumina
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection unspecified
Library Name NCIMB 14988
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
Spot Length 102
PROJECT COMPOSITION
Study Clostridium beijerinckii strains Genome project- Goettingen Genomics Laboratory
Organism Clostridium beijerinckii 59B
Analysis Projects Clostridium beijerinckii 59B
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal Level 4: Annotation Directed
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina GAIIx
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0103178
Organism Name
Clostridium beijerinckii 59B  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
FIRMICUTES  
Genus
Clostridium  
Genus Synonyms
  
Species
Clostridium beijerinckii  
Subspecies
  
Species Synonyms
  
Strain
59B  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
No  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1520
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Firmicutes  
NCBI Class
Clostridia  
NCBI Order
Clostridiales  
NCBI Family
Clostridiaceae  
NCBI Genus
Clostridium  
NCBI Species
Clostridium beijerinckii  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
Sporulating  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Singles
Diseases None
Known Habitats Soil
Metabolisms Solvent producer
Phenotypes
  
Energy Sources Chemoorganotroph
CYANOBACTERIA METADATA
Filaments
  
Filament Type
  
Differentiated Cells
  
Position Of Heterocysts
  
Cysts
  
Mode Of Reproduction
  
Trichome
  
Trichome Type
  
Carotenoids
  
Pigments
  
Phage Infectivity
  
Phage Type
  
Restriction Enzyme
  
Toxin Production
  
Toxin Type
  
Secondary Metabolites
  
Developmental Cycle
  
Branching
  
Gas Vesicles
  
Gas Vesicle Type
  
Diagnostic Inclusion Body Information
  
Extracellular Structures
  
Bloom Forming
  
Pigment Type
  
Complementary chromatic adaptation (CCA)
  
Medium Types
  

 

 

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