PROJECT INFORMATION
GOLD Project ID
Gp0102122  
Project Name
Nocardiopsis sp. EB03  
Other Names
  
Legacy ER Project ID
76895  
Legacy GOLD ID
Gi0076895  
NCBI BioProject Name Nocardiopsis sp. EB03
NCBI BioProject ID 222449
NCBI BioProject Accession PRJEB4217
NCBI Locus Tag
  
NCBI BioSample Accession
PI
Added By JGI automated process on 2014-08-08
Last Modified By
Project Comments
  
Project Status
incomplete  
Project Relevance
  
Sequencing Center European Bioinformatics Institute (United Kingdom)
Collaborating Institute
  
Funding Agency
  
Project Description
A novel halophilic actinomycete strain, EB03, was isolated from hypersaline soil sample collected in Oum El Bouaghi (Ezzemoul sabkha), northeastern Algeria. Strain EB03 was identified as a member of the genus Nocardiopsis. Phylogenetic analysis showed that strain EB03 had 16S rRNA gene sequence similarities of 98.4 % with Nocardiopsis rosea strain YIM 90094  (NCBI reference sequence: NR_043030.1).  
Is JGI Project
  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Non-contiguous finished genome sequence and description of Nocardiopsis massilioalgeriensis sp. nov.
Organism Nocardiopsis sp. EB03
Analysis Projects
  
Number of Analysis Projects 0
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status In progress
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0102122
Organism Name
Nocardiopsis sp. EB03  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
ACTINOBACTERIA  
Genus
Nocardiopsis  
Genus Synonyms
  
Species
Nocardiopsis sp. EB03  
Subspecies
  
Species Synonyms
  
Strain
EB03  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1347088
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Actinobacteria  
NCBI Class
Actinobacteria  
NCBI Order
Streptosporangiales  
NCBI Family
Nocardiopsaceae  
NCBI Genus
Nocardiopsis  
NCBI Species
Nocardiopsis sp. EB03  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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