PROJECT INFORMATION
GOLD Project ID
Gp0101179  
Project Name
Clostridium bornimense M2/40  
Other Names
  
Legacy ER Project ID
76594  
Legacy GOLD ID
Gi0076594, Gc0076594  
NCBI BioProject Name Draft genome sequence of the hydrogen-producing Clostridium sp. strain M2/40
NCBI BioProject ID 238033
NCBI BioProject Accession PRJEB4995
NCBI Locus Tag
CM240  
NCBI BioSample Accession
PI Daniel Wibberg
Added By JGI automated process on 2014-07-25
Last Modified By Galina Ovchinnikova on 2017-03-29
Project Comments
  
Project Status
Complete and Published  
Project Relevance
  
Sequencing Center Bielefeld University (Germany)
Collaborating Institute
  
Funding Agency
  
Project Description
The bacterium Clostridium sp. M2/40 is a mesophilic, anaerobic bacterium isolated from a two-phase lab-scale biogas reactor continuously fed with maize silage and 5% wheat straw. Grown on glucose it produced H2, CO2, formiate, lactate and propionate as the main fermentation products, of which some compounds can directly be used by Archaea to form methane. Here, the draft genome of the organism consisting of one circular chromosome and one 688 Kb chromid is reported, which provides the genetic basis for further investigations of the physiological potential of the bacterium and its role in biomass degradation.  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
PROJECT COMPOSITION
Study A hydrogen-producing Clostridium bornimense M2/40 isolated from a mesophilic biogas reactor for digestion and biomethanation of maize silage and wheat straw
Organism Clostridium bornimense M2/40
Analysis Projects Clostridium bornimense M2/40
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal Level 6: Finished
Sequencing Comments
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
29  
Chromosome Count
2  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0101179
Organism Name
Clostridium bornimense M2/40  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
FIRMICUTES  
Genus
Clostridium  
Genus Synonyms
  
Species
Clostridium bornimense  
Subspecies
  
Species Synonyms
  
Strain
M2/40  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
DSM 25664  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.25719  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1216932
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Firmicutes  
NCBI Class
Clostridia  
NCBI Order
Clostridiales  
NCBI Family
Clostridiaceae  
NCBI Genus
Clostridium  
NCBI Species
Clostridium bornimense  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
Rod-shaped  
Motility
  
Sporulation
Sporulating  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Biogas reactor
Metabolisms Lactose fermenting
Phenotypes
  
Energy Sources
  
CYANOBACTERIA METADATA
Filaments
  
Filament Type
  
Differentiated Cells
  
Position Of Heterocysts
  
Cysts
  
Mode Of Reproduction
  
Trichome
  
Trichome Type
  
Carotenoids
  
Pigments
  
Phage Infectivity
  
Phage Type
  
Restriction Enzyme
  
Toxin Production
  
Toxin Type
  
Secondary Metabolites
  
Developmental Cycle
  
Branching
  
Gas Vesicles
  
Gas Vesicle Type
  
Diagnostic Inclusion Body Information
  
Extracellular Structures
  
Bloom Forming
  
Pigment Type
  
Complementary chromatic adaptation (CCA)
  
Medium Types
  

 

 

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