PROJECT INFORMATION
GOLD Project ID
Gp0101150  
Project Name
Canditatus Phaeomarinobacter ectocarpi Ec32  
Other Names
  
Legacy ER Project ID
76565  
Legacy GOLD ID
Gi0076565, Gi0076565  
NCBI BioProject Name Candiatus Phaeomarinobacter ectocarpi Ec32 genome
NCBI BioProject ID 244304
NCBI BioProject Accession PRJEB6075
NCBI Locus Tag
BN1012  
NCBI BioSample Accession
PI Dittami, Simon
Added By JGI automated process on 2014-07-25
Last Modified By Jyothi Mallajosyula on 2014-08-04
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Environmental
Sequencing Center Observatoire Oceanologique, Centre National de la Recherche Scientifique (CNRS)
University Pierre and Marie Curie (UPMC)
Collaborating Institute
  
Funding Agency
  
Project Description
Rhizobiales and related orders of Alphaproteobacteria comprise several genera of nodule-inducing symbiotic bacteria associated to plant roots. Here we describe the genome of Canditatus Phaeomarinobacter ectocarpi Ec32, a member of a new candidate genus closely related to Rhizobiales and found in association with cultures of the filamentous brown algal model Ectocarpus. As of today, Ca. P. ectocarpi has not been successfully cultured, and identical rDNA sequences have been found exclusively associated to Ectocarpus. However, related sequences (97% identity) have also been detected free-living and in a Fucus vesiculosus microbiome barcoding project.  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
PROJECT COMPOSITION
Study The genome Canditatus Phaeomarinobacter ectocarpi Ec32, a new candidate genus of Alphaproteobacteria frequently associated to brown algae
Organism Canditatus Phaeomarinobacter ectocarpi Ec32
Analysis Projects Canditatus Phaeomarinobacter ectocarpi Ec32
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 2: High-Quality Draft
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Solexa
Illumina
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
59  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0101150
Organism Name
Canditatus Phaeomarinobacter ectocarpi Ec32  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-ALPHA  
Genus
  
Genus Synonyms
  
Species
Canditatus Phaeomarinobacter ectocarpi Ec32  
Subspecies
  
Species Synonyms
  
Strain
Ec32  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1458461
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Alphaproteobacteria  
NCBI Order
Rhizobiales  
NCBI Family
Rhodobiaceae  
NCBI Genus
Candidatus Phaeomarinobacter  
NCBI Species
Candidatus Phaeomarinobacter ectocarpi  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Algae
Metabolisms
  
Phenotypes
  
Energy Sources
  
CYANOBACTERIA METADATA
Filaments
  
Filament Type
  
Differentiated Cells
  
Position Of Heterocysts
  
Cysts
  
Mode Of Reproduction
  
Trichome
  
Trichome Type
  
Carotenoids
  
Pigments
  
Phage Infectivity
  
Phage Type
  
Restriction Enzyme
  
Toxin Production
  
Toxin Type
  
Secondary Metabolites
  
Developmental Cycle
  
Branching
  
Gas Vesicles
  
Gas Vesicle Type
  
Diagnostic Inclusion Body Information
  
Extracellular Structures
  
Bloom Forming
  
Pigment Type
  
Complementary chromatic adaptation (CCA)
  
Medium Types
  

 

 

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