Studies
|
45,272 |
|
Biosamples
|
100,946 |
|
Sequencing Projects
|
354,155 |
|
Analysis Projects
|
282,364 |
| Organisms | 386,507 |
| ORGANISM INFORMATION | |
|---|---|
| GOLD Organism ID |
Go0020870 |
|
Organism Name
|
Bacteroides xylanisolvens NLAE-zl-C29 |
| Other Names |
|
| Common Name |
|
|
NCBI Taxonomy ID
|
371601 |
| Domain |
BACTERIAL |
| Phylum |
BACTEROIDETES |
|
Genus
|
Bacteroides |
| Genus Synonyms |
|
|
Species
|
Bacteroides xylanisolvens |
| Species Synonyms |
|
| Serovar/Cultivar |
|
| Strain |
NLAE-zl-C29 |
| Subspecies |
|
| Type Strain |
No |
| Culture Collection ID |
|
| Organism Type |
Natural |
| Cultured |
Yes |
| Culture Type |
Isolate |
| Comments |
|
| Biosafety Level |
|
|
Taxon DOI
|
|
|
Exemplar DOI
|
|
|
Exemplar Name
|
|
| Genbank 16S ID |
|
| Is Public |
Yes |
| Related Sequencing Projects |
1 |
| Related Analysis Projects |
1 |
| NCBI TAXONOMY | |
|---|---|
| NCBI Organism Name |
Bacteroides xylanisolvens |
|
NCBI Tax ID
|
371601 |
| NCBI Superkingdom |
Bacteria |
| NCBI Kingdom |
|
| NCBI Phylum |
Bacteroidetes |
| NCBI Class |
Bacteroidia |
| NCBI Order |
Bacteroidales |
| NCBI Family |
Bacteroidaceae |
| NCBI Genus |
Bacteroides |
| NCBI Species |
Bacteroides xylanisolvens |
| ORGANISM METADATA | |
|---|---|
| Cell Diameter |
|
| Cell Shape |
Rod-shaped |
| Color |
|
| Gram Stain |
Gram- |
| Motility |
Nonmotile |
| Oxygen Requirement (MIGS-22) |
Anaerobe |
| pH |
|
| Salinity (MIGS-6.3) |
|
| Pressure |
|
| Sporulation |
Nonsporulating |
|
Carbon Source
|
|
| Biotic Relationships (MIGS-14) |
|
| Temperature Range |
Mesophile |
| Growth Temperature |
|
| Cell Length |
|
| Commercial Strain |
|
| Commercial Strain Comments |
|
| Cell Arrangements |
|
| Diseases (MIGS-15) |
|
| Habitats (MIGS-6) |
Host Animal gastrointestinal tract |
| Metabolism |
|
| Phenotypes |
|
| Energy Sources |
|
| Body Products |
Feces |
| COLLECTION DATE | |
|---|---|
|
Collection Date
(MIGS-5)
|
|
| ORGANISM ISOLATION | |
|
Sample Isolation Publication
|
|
|
Sample Collection Site
(MIGS-13)
|
Cow gastrointesitnal tract |
| Isolation Country |
USA |
| Sample Isolation Comments |
|
|
Sample Collection Method
|
|
|
Contact Name
|
Cherie Ziemer |
|
Contact Email
|
cherie.ziemer@ars.usda.gov |
| HOST METADATA | |
|
Isolation Host Name
|
Bos taurus |
|
Host Taxonomy ID
|
9913 |
| Host Gender |
Female |
| Host Race |
|
| Host Age |
|
| Host Health Condition |
|
| Patient Visit Number |
|
| Host Medication |
|
| Medical Record Number |
|
| Host Body Site |
Gastrointestinal tract |
| Host Body Subsite |
Rectal |
| Host Body Product |
Feces |
| Host Specificity or Range |
|
| Host Comments |
|
|
ECOSYSTEM CLASSIFICATION
|
|
|---|---|
| Ecosystem |
Host-associated |
| Ecosystem Category |
Mammals |
| Ecosystem Type |
Digestive system |
| Ecosystem Subtype |
Unclassified |
| Specific Ecosystem |
Unclassified |
| Ecosystem Path Id |
4107 |
| ENVIRONMENTAL INFORMATION | |
|
Geographic Location
(MIGS-4)
|
Ames, Iowa, USA |
|
Latitude
(MIGS-4.1)
|
42.0347222 |
|
Longitude
(MIGS-4.2)
|
-93.6197222 |
|
LatLong Information
|
|
| Geographical Map | |
| Altitude (MIGS-4.4) |
|
| Elevation |
287 Meters.
|
| Depth (MIGS-4.3) |
|
| Subsurface Depth |
|
| Sample Collection Temperature |
|
| Chlorophyll Concentration |
|
| Nitrate Concentration |
|
| Oxygen Concentration |
|
| Salinity Concentration |
|
| Methane Concentration (mmol) |
|
|
Sample Conductivity
|
|
| Growth Conditions |
|
| Bicarbonate Concentration (mM) |
|
| Soluble Iron Concentration (uM) |
|
| Hydrogen Sulfide Concentration (mM) |
|
| Hydrogen Sulfide Presence |
|
| Irradiance |
|
| ProPortal Ocean |
|
| ProPortal Isolation |
|
| ProPortal Station |
|
| ProPortal WOA Temperature |
|
| ProPortal WOA Salinty |
|
| ProPortal WOA Oxygen |
|
| ProPortal WOA Silicate |
|
| ProPortal WOA Phosphate |
|
| ProPortal WOA Nitrate |
|
