Studies
|
47,488 |
|
Biosamples
|
121,419 |
|
Sequencing Projects
|
388,853 |
|
Analysis Projects
|
310,138 |
| Organisms | 403,380 |
| ORGANISM INFORMATION | |
|---|---|
| GOLD Organism ID |
Go0000953 |
|
Organism Name
|
Pseudarthrobacter phenanthrenivorans Sphe3 |
| Other Names |
Arthrobacter phenanthrenivorans Sphe3 |
| Common Name |
|
| Domain |
BACTERIAL |
|
Genus
|
Pseudarthrobacter |
| Genus Synonyms |
Arthrobacter |
|
Species
|
Pseudarthrobacter phenanthrenivorans |
| Species Synonyms |
|
| Strain |
Sphe3 |
| Subspecies |
|
|
Phylogenetic Markers
|
|
|
Taxonomy Classification Method
|
|
| Serovar/Cultivar |
|
| Phylum |
ACTINOBACTERIA |
|
NCBI Taxonomy ID
|
930171 |
| Type Strain |
Yes |
| Culture Collection ID |
DSM 18606 |
| Organism Type |
Natural |
| Cultured |
Yes |
| Culture Type |
Isolate |
| Comments |
|
| Biosafety Level |
1 |
|
Taxon DOI
|
10.1601/tx.28356 |
|
Exemplar DOI
|
10.1601/ex.13221 |
|
Exemplar Name
|
Pseudarthrobacter phenanthrenivorans |
| Genbank 16S ID |
AM176541 |
| Is Public |
Yes |
| Related Sequencing Projects |
1 |
| Related Analysis Projects |
1 |
| NCBI TAXONOMY | |
|---|---|
| NCBI Organism Name |
Pseudarthrobacter phenanthrenivorans Sphe3 |
|
NCBI Tax ID
|
930171 |
| NCBI Superkingdom |
Bacteria |
| NCBI Kingdom |
|
| NCBI Phylum |
Actinobacteria |
| NCBI Class |
Actinobacteria |
| NCBI Order |
Micrococcales |
| NCBI Family |
Micrococcaceae |
| NCBI Genus |
Pseudarthrobacter |
| NCBI Species |
Pseudarthrobacter phenanthrenivorans |
| ORGANISM METADATA | |
|---|---|
| Cell Diameter |
|
| Cell Shape |
Rod-shaped |
| Color |
|
| Gram Stain |
Gram+ |
| Motility |
Nonmotile |
| Oxygen Requirement (MIGS-22) |
Aerobe |
| pH |
|
| Salinity (MIGS-6.3) |
|
| Pressure |
|
| Sporulation |
Nonsporulating |
|
Carbon Source
|
|
| Growth Temperature |
30 Celcius.
|
| Cell Length |
|
| Commercial Strain |
|
| Commercial Strain Comments |
|
| Cell Arrangements |
|
| Diseases (MIGS-15) |
None |
| Habitats (MIGS-6) |
Soil |
| Metabolism |
PAH-degrading |
| Phenotypes |
|
| Energy Sources |
|
| Biotic Relationships (MIGS-14) |
Free living |
|
Propagation
|
|
| ORGANISM ISOLATION | |
|---|---|
|
Collection Date
(MIGS-5)
|
4/1/2000 |
|
Sample Isolation Publication
|
|
|
Sample Collection Site
(MIGS-13)
|
Creosote polluted soil at Perivleptos (Epirus, Greece) |
| Isolation Country |
Greece |
| Sample Isolation Comments |
|
|
Collection Method
|
|
|
Contact Name
|
Kyrpides N |
|
Contact Email
|
nckyrpides@lbl.gov |
|
ECOSYSTEM CLASSIFICATION
|
|
|---|---|
| Ecosystem |
Environmental |
| Ecosystem Category |
Terrestrial |
| Ecosystem Type |
Soil |
| Ecosystem Subtype |
Unclassified |
| Specific Ecosystem |
Contaminated |
| Ecosystem Path Id |
4215 |
| ENVIRONMENTAL INFORMATION | |
|
Geographic Location
(MIGS-4)
|
Perivleptos, Epirus, Greece |
| Lat/Long Lookup |
|
|
Latitude
(MIGS-4.1)
|
39.789 |
|
Longitude
(MIGS-4.2)
|
20.781 |
|
LatLong Information
|
Inferred |
| Geographical Map | |
| Broad-scale environmental context (MIxS:0000012) |
|
| Local environmental context (MIxS:0000013) |
|
| Environmental medium (MIxS:0000014) |
|
| Altitude (MIGS-4.4) |
|
| Elevation |
|
| Depth (MIGS-4.3) |
|
| Subsurface Depth |
|
| Temperature Range |
Mesophile |
| Sample Collection Temperature |
28 Celcius.
|
| Chlorophyll Concentration |
|
| Nitrate Concentration |
|
| Oxygen Concentration |
|
| Salinity Concentration |
|
| Methane Concentration (mmol) |
|
|
Sample Conductivity
|
|
| Growth Conditions |
|
| Bicarbonate Concentration (mM) |
|
| Soluble Iron Concentration (uM) |
|
| Hydrogen Sulfide Concentration (mM) |
|
| Hydrogen Sulfide Presence |
|
| Irradiance |
|
| ProPortal Ocean |
|
| ProPortal Isolation |
|
| ProPortal Station |
|
| ProPortal WOA Temperature |
|
| ProPortal WOA Salinty |
|
| ProPortal WOA Oxygen |
|
| ProPortal WOA Silicate |
|
| ProPortal WOA Phosphate |
|
| ProPortal WOA Nitrate |
|
