BIOSAMPLE NAME
GOLD Biosample ID Gb0050983
Biosample Name Simulated microbial communities from the Joint Genome Institute - simLC - Simulated Low Complexity Metagenome
Other Names
Habitat (MIGS-6) Simulated
Community microbial communities
Location from the Joint Genome Institute, California, USA
Identifier
Add Date 2007-12-04
Last Modified By Ioanna Pagani on 2013-07-25
BIOSAMPLE DESCRIPTION
Biosample Description
Biosample Information
Biosample Information Visibility Yes
GOLD CLASSIFICATION
Ecosystem Engineered
Ecosystem Category Modeled
Ecosystem Type Simulated communities (sequence read mixture)
Ecosystem Subtype Sanger
Specific Ecosystem Unclassified
BIOSAMPLE COMPOSITION
Number of Studies 1
Number of Seq Projects 1
Number of Analysis Projects 0
Number of Related Biosamples 11
BIOSAMPLE ISOLATION
Sample Collection Site (MIGS-13) JGI, Walnut Creek, CA, USA
Sample Collection Date (MIGS-5)
Sample Collection Publication
Sample Isolation Comments
Sample Isolation Country USA
Sample Collection Method In silico
Added By Nikos Kyrpides on 2007-12-04
Sample Contact Name Kostas Mavrommatis
Sample Contact Email KMavrommatis@lbl.gov
ENVIRONMENTAL INFORMATION
Geographic Location (MIGS-4) JGI, Walnut Creek, CA, USA
Latitude (MIGS-4.1) 37.9317505109119
Longitude (MIGS-4.2) -122.02172935009
Geographical Map
LatLong Information
Altitude (MIGS-4.4) 32m
Depth (MIGS-4.3)
Temperature Range
Sample Collection Temperature
Salinity (MIGS-6.3)
Pressure
pH
Chlorophyll Concentration
Nitrate Concentration
Oxygen Concentration
Salinity Concentration
Habitat  Simulated
Growth Conditions
Isolation Host Name
Host Taxonomy ID
Host Gender
Host Race
Host Age
Host Health Condition
Patient Visit Number
Host Medication
Medical Record Number
Host Body Site
Host Body Subsite
Host Body Product
Host Specificity or Range
Host Comments

Custom Biogas/Reactor Metadata Package

* oDM - organic dry matter
Substrates
Temperature
Retention Time
Yield (L/Kg-oDM)
Volatile Organic Acids (VOA)
Total Inorganic Carbon (TIC)
VOA/TIC
Acetic Acid
Ammonium
Butanol
Ethanol
Propanol
Methanol
Butyl Acid
Iso Butyl Acid
Valeric Acid
Iso Valeric Acid
Propionic Acid
Methane Percentage