ANALYSIS PROJECT INFORMATION
GOLD Analysis Project ID Ga0543727
Analysis Project Name Metatranscriptome of rhizosphere soil fungal communities from apple tree from orchard in Shaanxi, China - XW
Analysis Project Name Suffix
Analysis Project Type Metatranscriptome Analysis
IMG Submission ID
Completion Status Incomplete
IMG Completion Date
PI
Analysis Project Description Assembly and annotation of public SRA data set.
Visibility Public
ANALYSIS PROJECT METADATA
Assembly Method (MIGS-30) Custom JGI assembly.
Scaffold Count
Contig Count
Gene Calling Method (MIGS-32)
Gene Count
Estimated Size
Sequencing Depth (MIGS-31.1)
Genbank Anomalous Assembly
Genbank Anomalous Reason
Annotation Pipeline
Added By JGI automated process on 2022-05-11
Last Modified By
ORF Comparison Tools
PROJECT EXTERNAL REFERENCES
IMG Taxon ID
IMG RNA-Seq ID
Genbank Accession
Genbank Release Date
SRA Runs
 
SRA Run Id SRR16944576  (Link to NCBI )
 
SRA Run Id SRR16944575  (Link to NCBI )
 
SRA Run Id SRR16944577  (Link to NCBI )
ANALYSIS PROJECT COMPOSITION
Study Rhizosphere soil fungal communities from apple trees from orchards in various locations China
Number of Studies 1
Number of Biosamples 1
Number of Projects 1
Number of Related Analysis Projects 0

 

 

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