ANALYSIS PROJECT INFORMATION
GOLD Analysis Project ID Ga0522793
Analysis Project Name Salmonella enterica enterica sv. 4,[5],12:i:- L-4614
Analysis Project Name Suffix
Analysis Project Type Genome Analysis (Isolate)
IMG Submission ID
Completion Status Incomplete
IMG Completion Date
PI
Analysis Project Description Submitting a public genome from NCBI/GenBank to IMG for analysis.
Visibility Public
ANALYSIS PROJECT METADATA
Assembly Method (MIGS-30) Canu v. 1.4; minimap v. 0.2-r124; racon v.1.1.0; circlator v. 1.5.3; Pilon v. 1.18;
IMG Decontamination
IMG Decontamination Method
Scaffold Count
Contig Count 2
Gene Calling Method (MIGS-32)
Gene Count 5024
Estimated Size 5150000
Sequencing Depth (MIGS-31.1) 100x
Genbank Anomalous Assembly No
Genbank Anomalous Reason
Annotation Pipeline
Added By JGI automated process on 2021-12-24
Last Modified By
ORF Comparison Tools
PROJECT EXTERNAL REFERENCES
IMG Taxon ID
Genbank Accession
Genbank ID AP023315 (GCA_019670425.1)
Release Date 2021-08-19
NCBI Genbank Version AP023315.1
Genbank ID AP023316 (GCA_019670425.1)
Release Date 2021-08-19
NCBI Genbank Version AP023316.1
Genbank Release Date 2021-08-19
ANALYSIS PROJECT COMPOSITION
Study Whole genome sequencing of Salmonella enterica serovar Typhimurium and its monophasic variant isolated from food animals in Japan
Number of Studies 1
Number of Projects 1
Number of Related Analysis Projects 0

 

 

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