ANALYSIS PROJECT INFORMATION
GOLD Analysis Project ID Ga0395880
Analysis Project Name Prefix Metatranscriptome of seawater microbial communities from the Indian Ocean - ParticleExp02_R33
Analysis Project Name Suffix
Analysis Project Type Metatranscriptome Analysis
IMG Submission ID 222233
Completion Status Complete
IMG Completion Date 2019-12-02
PI Steven Wilhelm
Description
Visibility Public
ANALYSIS PROJECT METADATA
Assembly Method (MIGS-30) megahit v. MEGAHIT v1.1.2
IMG Decontamination
IMG Decontamination Method
GenePRIMP
Scaffold Count 474675
Contig Count
Gene Calling Method (MIGS-32)
Gene Count 549759
Estimated Size 261734185
Sequencing Depth (MIGS-31.1)
Annotation Pipeline IMG Annotation Pipeline v.5.0.8
Added By JGI automated process on 2019-08-14
Last Modified By JGI automated process on 2019-12-03
Non-SP-Owner AP No
PROJECT EXTERNAL REFERENCES
IMG Taxon ID 3300036657
IMG RNA-Seq ID
Genbank
Assembly Accession
Genbank Release Date
SRA Runs
ANALYSIS PROJECT COMPOSITION
Study Seawater microbial communities from the Antarctic Ocean
Number of Studies 1
Number of Biosamples 1
Number of Projects 1
Number of Related Analysis Projects 1
Derived Analysis Projects 1
JGI INFORMATION
ITS Analysis Project ID 1251323 (Portal)
ITS Analysis Project Name ParticleExp02_R33 metatranscriptome Annotation
ITS Analysis Product Name Metagenome Metatranscriptome
ITS NCBI Taxon ID
ITS Version Number

 

 

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