ANALYSIS PROJECT INFORMATION
GOLD Analysis Project ID Ga0334613
Analysis Project Name Prefix Metatranscriptome of enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Bagasse, Gen2, Rep 3, Penicillin and Streptomycin
Analysis Project Name Suffix
Analysis Project Type Metatranscriptome Analysis
IMG Submission ID 204539
Completion Status Complete
Completion Date 2018-12-10
PI Michelle O'Malley
Description
Visibility Public
ANALYSIS PROJECT METADATA
Assembly Method (MIGS-30) megahit v. MEGAHIT v1.1.2
IMG Decontamination
IMG Decontamination Method
GenePRIMP
Scaffold Count 27576
Contig Count
Gene Calling Method (MIGS-32)
Gene Count 29130
Estimated Size 27487549
Sequencing Depth (MIGS-31.1)
Annotation Pipeline IMG Annotation Pipeline v.4.16.6
Added By JGI automated process on 2018-12-06
Last Modified By JGI automated process on 2018-12-10
PROJECT EXTERNAL REFERENCES
IMG Taxon ID 3300032147
IMG RNA-Seq ID
Genbank ID
Assembly Accession
Assembly Methods
ANALYSIS PROJECT COMPOSITION
Study Determining the genomic basis for interactions between gut fungi and methanogenic archaea
Number of Studies 1
Number of Biosamples 1
Number of Projects 1
Number of Related Analysis Projects 2
Derived Analysis Projects 1
JGI INFORMATION
ITS Analysis Project ID 1236089 (Portal)
ITS Analysis Project Name Goat fecal pellet Enrichment Culture - Bagasse, Gen2, Rep 3, treated with Penicillin and Streptomycin(v3)
ITS Analysis Product Name Eukaryote Community Metatranscriptome
ITS NCBI Taxon ID
ITS Version Number

 

 

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