Studies
|
54,050 |
|
Biosamples
|
174,384 |
|
Sequencing Projects
|
485,182 |
|
Analysis Projects
|
368,789 |
| Organisms | 468,033 |
| ANALYSIS PROJECT INFORMATION | |
|---|---|
|
GOLD Analysis Project ID
|
Ga0307903 |
| Analysis Project Name |
Metatranscriptome of enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Bagasse, Gen2, Rep 2, Chloramphenicol (Eukaryote Community Metatranscriptome) (v2) |
| Analysis Project Name Stem |
Metatranscriptome of enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Bagasse, Gen2, Rep 2, Chloramphenicol |
|
Analysis Project Name Suffix
|
(v2) |
|
Analysis Project Type
|
Metatranscriptome Analysis |
|
IMG Submission ID
|
204471 |
| Completion Status |
Complete |
|
IMG Completion Date
|
2018-12-10 |
| PI | Michelle O'Malley |
|
Analysis Project Description
|
|
| Visibility | Public |
| ANALYSIS PROJECT METADATA | |
|
Assembly Method
(MIGS-30)
|
megahit v. 1.1.2 |
|
Scaffold Count
|
22582 |
|
Contig Count
|
|
|
Gene Calling Method
(MIGS-32)
|
|
| Gene Count |
23852 |
| Estimated Size |
23787645 |
|
Sequencing Depth
(MIGS-31.1)
|
|
| Genbank Anomalous Assembly |
|
| Genbank Anomalous Reason |
|
| Annotation Pipeline |
IMG Annotation Pipeline v.4.16.6 |
| Added By |
JGI automated process
on 2018-07-12 |
| Last Modified By |
JGI automated process
on 2021-11-07 |
|
ORF Comparison Tools
|
|
| PROJECT EXTERNAL REFERENCES | |
|
IMG Taxon ID
|
3300032128 |
| IMG RNA-Seq ID |
|
|
Genbank Accession
|
|
| Genbank Release Date |
|
| SRA Runs |
|
| ANALYSIS PROJECT COMPOSITION | |
| Study |
Determining the genomic basis for interactions between gut fungi and methanogenic archaea |
|
Number of Studies
|
1 |
|
Number of Biosamples
|
1 |
|
Number of Projects
|
1 |
|
Number of Related Analysis Projects
|
1 |
| JGI INFORMATION | |
|
JGI Data Utilization Status
|
Unrestricted |
|
ITS Analysis Project ID
|
1208626 (Portal) |
|
ITS Analysis Project Name
|
Goat fecal pellet Enrichment Culture - Bagasse, Gen2, Rep 2, treated with Chloramphenicol(v2) |
|
ITS Analysis Product Name
|
Eukaryote Community Metatranscriptome |
| ITS Version Number |
2 |
|
JGI Award DOI
|
10.46936/10.25585/60001061 |
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