ANALYSIS PROJECT INFORMATION | |
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GOLD Analysis Project ID
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Ga0307903 |
Analysis Project Name |
Metatranscriptome of enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Bagasse, Gen2, Rep 2, Chloramphenicol (Eukaryote Community Metatranscriptome) (v2) |
Analysis Project Name Stem |
Metatranscriptome of enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Bagasse, Gen2, Rep 2, Chloramphenicol |
Analysis Project Name Suffix
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(v2) |
Analysis Project Type
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Metatranscriptome Analysis |
IMG Submission ID
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204471 |
Completion Status |
Complete |
IMG Completion Date
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2018-12-10 |
PI | Michelle O'Malley |
Analysis Project Description
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|
Visibility | Public |
ANALYSIS PROJECT METADATA | |
Assembly Method
(MIGS-30)
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megahit v. 1.1.2 |
Scaffold Count
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22582 |
Contig Count
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Gene Calling Method
(MIGS-32)
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Gene Count |
23852 |
Estimated Size |
23787645 |
Sequencing Depth
(MIGS-31.1)
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Genbank Anomalous Assembly |
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Genbank Anomalous Reason |
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Annotation Pipeline |
IMG Annotation Pipeline v.4.16.6 |
Added By |
JGI automated process
on 2018-07-12 |
Last Modified By |
JGI automated process
on 2021-11-07 |
ORF Comparison Tools
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PROJECT EXTERNAL REFERENCES | |
IMG Taxon ID
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3300032128 |
IMG RNA-Seq ID |
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Genbank Accession
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Genbank Release Date |
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SRA Runs |
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ANALYSIS PROJECT COMPOSITION | |
Study |
Determining the genomic basis for interactions between gut fungi and methanogenic archaea |
Number of Studies
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1 |
Number of Biosamples
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1 |
Number of Projects
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1 |
Number of Related Analysis Projects
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1 |
JGI INFORMATION | |
JGI Data Utilization Status
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Unrestricted |
ITS Analysis Project ID
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1208626 (Portal) |
ITS Analysis Project Name
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Goat fecal pellet Enrichment Culture - Bagasse, Gen2, Rep 2, treated with Chloramphenicol(v2) |
ITS Analysis Product Name
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Eukaryote Community Metatranscriptome |
ITS Version Number |
2 |
JGI Award DOI
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10.46936/10.25585/60001061 |
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