ANALYSIS PROJECT INFORMATION
GOLD Analysis Project ID Ga0307903
Analysis Project Name Prefix Metatranscriptome of enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Bagasse, Gen2, Rep 2, Chloramphenicol
Analysis Project Name Suffix (v2)
Analysis Project Type Metatranscriptome Analysis
IMG Submission ID 204471
Completion Status Complete
IMG Completion Date 2018-12-10
PI Michelle O'Malley
Analysis Project Description
Visibility Public
ANALYSIS PROJECT METADATA
Assembly Method (MIGS-30) megahit v. MEGAHIT v1.1.2
Scaffold Count 22582
Contig Count
Gene Calling Method (MIGS-32)
Gene Count 23852
Estimated Size 23787645
Sequencing Depth (MIGS-31.1)
Annotation Pipeline IMG Annotation Pipeline v.4.16.6
Added By JGI automated process on 2018-07-12
Last Modified By JGI automated process on 2021-11-07
ORF Comparison Tools
PROJECT EXTERNAL REFERENCES
IMG Taxon ID 3300032128
IMG RNA-Seq ID
Genbank Accession
Genbank Release Date
SRA Runs
ANALYSIS PROJECT COMPOSITION
Study Determining the genomic basis for interactions between gut fungi and methanogenic archaea
Number of Studies 1
Number of Biosamples 1
Number of Projects 1
Number of Related Analysis Projects 1
JGI INFORMATION
JGI Data Utilization Status Unrestricted
ITS Analysis Project ID 1208626 (Portal)
ITS Analysis Project Name Goat fecal pellet Enrichment Culture - Bagasse, Gen2, Rep 2, treated with Chloramphenicol(v2)
ITS Analysis Product Name Eukaryote Community Metatranscriptome
ITS Version Number 2

 

 

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