ANALYSIS PROJECT INFORMATION
GOLD Analysis Project ID Ga0191223
Analysis Project Name Prefix Nitrospina sp. JGI 01_D9_1000m
Analysis Project Name Suffix
Analysis Project Type Single Cell Analysis (screened)
IMG Submission ID 133297
Completion Status Complete
Completion Date 2017-06-16
PI Edward DeLong
Description
Contamination Screening Method
Visibility Public
ANALYSIS PROJECT METADATA
Assembly Method (MIGS-30) spades v. 3.9.0
IMG Decontamination Yes
IMG Decontamination Method PhiX decontamination
GenePRIMP
Scaffold Count 19
Contig Count
Gene Calling Method (MIGS-32)
Gene Count 261
Estimated Size 248270
Sequencing Depth (MIGS-31.1)
Annotation Pipeline IMG Annotation Pipeline v.4.15.1
Added By JGI automated process on 2017-05-22
Last Modified By JGI automated process on 2019-05-06
Non-SP-Owner AP No
PROJECT EXTERNAL REFERENCES
IMG Taxon ID 2737471732
IMG RNA-Seq ID
Genbank
Assembly Accession
SRA Runs
ANALYSIS PROJECT COMPOSITION
Study Comprehensive metagenome and single cell genome sequencing from the open ocean community of North Pacfic Subtropical Gyre, Station ALOHA
Number of Studies 1
Number of Biosamples 0
Number of Projects 1
Number of Related Analysis Projects 1
Derived Analysis Projects 0
JGI INFORMATION
ITS Analysis Project ID 1136651 (Portal)
ITS Analysis Project Name Nitrospina bacterium JGI 01_D9_1000m Screened
ITS Analysis Product Name Microbial Minimal Draft Single Cell Screened Genome
ITS NCBI Taxon ID
ITS Version Number 1

 

 

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