ANALYSIS PROJECT INFORMATION
GOLD Analysis Project ID Ga0133336
Analysis Project Name Prefix Chlamydia trachomatis Ia/CS190/96
Analysis Project Name Suffix
Analysis Project Type Genome Analysis
IMG Submission ID 92309
Completion Status Complete
Completion Date 2016-07-27
PI
Description Submitting a public genome from NCBI/GenBank to IMG for analysis.
Visibility Public
ANALYSIS PROJECT METADATA
Assembly Method (MIGS-30) Bowtie2 v. 2.1.0; BWA v. 0.7.5.a
IMG Decontamination Yes
IMG Decontamination Method PhiX decontamination
GenePRIMP No
Scaffold Count 2
Contig Count 2
Gene Calling Method (MIGS-32)
Gene Count 945
Estimated Size 1049505
Sequencing Depth (MIGS-31.1) 307x
Annotation Pipeline IMG Annotation Pipeline v.4.11.4
Added By JGI automated process on 2016-07-01
Last Modified By JGI automated process on 2017-11-21
Non-SP-Owner AP No
PROJECT EXTERNAL REFERENCES
IMG Taxon ID 2687453616
IMG RNA-Seq ID
Genbank
Genbank ID CP010571 (GCA_001183845.1)
Release Date 2015-08-13
NCBI Genbank Version CP010571.1
Genbank ID CP010572 (GCA_001183845.1)
Release Date 2015-08-13
NCBI Genbank Version CP010572.1
Assembly Accession GCA_001183845.1
SRA Runs
ANALYSIS PROJECT COMPOSITION
Study Chlamydia trachomatis genome sequencing - NIH, Portugal
Number of Studies 1
Number of Projects 1
Number of Related Analysis Projects 0
Derived Analysis Projects 0

 

 

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