ANALYSIS PROJECT INFORMATION | |||||||
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GOLD Analysis Project ID
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Ga0132969 |
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Analysis Project Name Prefix |
Lactobacillus plantarum Nizo1837 |
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Analysis Project Name Suffix
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Analysis Project Type
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Genome Analysis |
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IMG Submission ID
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143717 | ||||||
Completion Status |
Complete |
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IMG Completion Date
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2017-08-11 |
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PI | |||||||
Description
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Submitting a public genome from NCBI/GenBank to IMG for analysis. |
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Visibility | Public | ||||||
ANALYSIS PROJECT METADATA | |||||||
Assembly Method
(MIGS-30)
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SPAdes v. 3.5.0 |
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IMG Decontamination
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Yes |
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IMG Decontamination Method
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PhiX decontamination |
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GenePRIMP |
No |
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Scaffold Count
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30 |
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Contig Count
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48 |
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Gene Calling Method
(MIGS-32)
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Gene Count |
3204 |
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Estimated Size |
3302451 |
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Sequencing Depth
(MIGS-31.1)
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20.0x |
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Annotation Pipeline |
IMG Annotation Pipeline v.4.15.1 |
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Added By |
JGI automated process
on 2016-07-01 |
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Last Modified By | |||||||
Non-SP-Owner AP |
No |
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PROJECT EXTERNAL REFERENCES | |||||||
IMG Taxon ID
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2744054681 |
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IMG RNA-Seq ID |
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Genbank
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Assembly Accession |
GCA_001651845.1 |
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Genbank Release Date |
2016-06-03 |
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SRA Runs |
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ANALYSIS PROJECT COMPOSITION | |||||||
Study |
Lactobacillus plantarum Nizo1837 genome sequencing |
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Number of Studies
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1 |
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Number of Projects
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1 |
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Number of Related Analysis Projects
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0 |
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Derived Analysis Projects
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0 |
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