ANALYSIS PROJECT INFORMATION
GOLD Analysis Project ID Ga0128932
Analysis Project Name Prefix Pseudomonas parafulva NS96
Analysis Project Name Suffix
Analysis Project Type Genome Analysis
IMG Submission ID 129377
Completion Status Complete
IMG Completion Date 2017-05-11
PI
Description Submitting a public genome from NCBI/GenBank to IMG for analysis.
Visibility Public
ANALYSIS PROJECT METADATA
Assembly Method (MIGS-30) CLC Genomics Workbench v. 7.5
IMG Decontamination Yes
IMG Decontamination Method PhiX decontamination
GenePRIMP No
Scaffold Count 115
Contig Count 162
Gene Calling Method (MIGS-32)
Gene Count 4356
Estimated Size 4638029
Sequencing Depth (MIGS-31.1) 177x
Annotation Pipeline IMG Annotation Pipeline v.4.15.1
Added By JGI automated process on 2016-06-07
Last Modified By JGI automated process on 2017-05-05
Non-SP-Owner AP No
PROJECT EXTERNAL REFERENCES
IMG Taxon ID 2731957907
IMG RNA-Seq ID
Genbank
Genbank ID LDSN00000000 (GCA_001477425.1)
Release Date 2015-12-23
NCBI Genbank Version LDSN01
Assembly Accession GCA_001477425.1
Genbank Release Date 2015-12-23
SRA Runs
ANALYSIS PROJECT COMPOSITION
Study To understand ecology and evolution of rice seed associated bacteria by whole genome sequencing
Number of Studies 1
Number of Projects 1
Number of Related Analysis Projects 0
Derived Analysis Projects 0

 

 

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