ANALYSIS PROJECT INFORMATION
GOLD Analysis Project ID Ga0125788
Analysis Project Name Prefix Pseudomonas amygdali pv. aesculi 2315
Analysis Project Name Suffix
Analysis Project Type Genome Analysis
IMG Submission ID 111299
Completion Status Complete
Completion Date 2017-02-02
PI
Description Submitting a public genome from NCBI/GenBank to IMG for analysis.
Visibility Public
ANALYSIS PROJECT METADATA
Assembly Method (MIGS-30) SPAdes v. 2.4.0
IMG Decontamination Yes
IMG Decontamination Method PhiX decontamination
GenePRIMP No
Scaffold Count 229
Contig Count 287
Gene Calling Method (MIGS-32)
Gene Count 5909
Estimated Size 6105990
Sequencing Depth (MIGS-31.1) 88.0x
Annotation Pipeline IMG Annotation Pipeline v.4.14.3
Added By JGI automated process on 2016-05-27
Last Modified By
Non-SP-Owner AP No
PROJECT EXTERNAL REFERENCES
IMG Taxon ID 2713897235
IMG RNA-Seq ID
Genbank
Genbank ID LILJ00000000 (GCA_001538185.1)
Release Date 2016-01-26
NCBI Genbank Version LILJ01
Assembly Accession GCA_001538185.1
SRA Runs
ANALYSIS PROJECT COMPOSITION
Study Genome sequencing and assembly of strains from Pseudomonas syringae species complex - University of Edinburgh
Number of Studies 1
Number of Projects 1
Number of Related Analysis Projects 0
Derived Analysis Projects 0

 

 

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