ANALYSIS PROJECT INFORMATION
GOLD Analysis Project ID Ga0115537
Analysis Project Name Prefix Uncultured parvibaculum JGI SC39-J11
Analysis Project Name Suffix
Analysis Project Type Single Cell Analysis (unscreened)
IMG Submission ID 83484
Completion Status Complete
IMG Completion Date 2016-04-04
PI Regina Lamendella
Description
Contamination Screening Method
Visibility Public
ANALYSIS PROJECT METADATA
Assembly Method (MIGS-30) spades v. 3.6.2
IMG Decontamination Yes
IMG Decontamination Method PhiX decontamination
GenePRIMP
Scaffold Count 86
Contig Count
Gene Calling Method (MIGS-32)
Gene Count 542
Estimated Size 494496
Sequencing Depth (MIGS-31.1)
Annotation Pipeline IMG Annotation Pipeline v.4.10.2
Added By JGI automated process on 2016-03-27
Last Modified By JGI automated process on 2019-05-03
Non-SP-Owner AP No
PROJECT EXTERNAL REFERENCES
IMG Taxon ID 2660238793
IMG RNA-Seq ID
Genbank
Assembly Accession
Genbank Release Date
SRA Runs
ANALYSIS PROJECT COMPOSITION
Study Freshwater and sediment microbial communities from various areas in North America, analyzing microbe dynamics in response to fracking
Number of Studies 1
Number of Biosamples 0
Number of Projects 1
Number of Related Analysis Projects 1
Derived Analysis Projects 0
JGI INFORMATION
ITS Analysis Project ID 1094657 (Portal)
ITS Analysis Project Name Uncultured parvibaculum JGI SC39-J11 Unscreened
ITS Analysis Product Name Microbial Minimal Draft Single Cell Unscreened Genome
ITS NCBI Taxon ID
ITS Version Number 1

 

 

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