ANALYSIS PROJECT INFORMATION
GOLD Analysis Project ID Ga0111590
Analysis Project Name Prefix Pseudomonas putida KT2440
Analysis Project Name Suffix
Analysis Project Type Genome Analysis
IMG Submission ID 85962
Completion Status Complete
Completion Date 2016-05-07
PI John Gladden
Description
Visibility Public
ANALYSIS PROJECT METADATA
Assembly Method (MIGS-30) HGAP v. 2.3.0_p5,protocol version=2.3.0 method=RS_HGAP_Assembly.3,smrtpipe.py v1.87.139483,
IMG Decontamination Yes
IMG Decontamination Method PhiX decontamination
GenePRIMP Yes
Scaffold Count 1
Contig Count
Gene Calling Method (MIGS-32)
Gene Count 5869
Estimated Size 6202963
Sequencing Depth (MIGS-31.1) 198x
Annotation Pipeline IMG Annotation Pipeline v.4.10.2
Added By JGI automated process on 2016-02-19
Last Modified By JGI automated process on 2019-05-03
Non-SP-Owner AP No
PROJECT EXTERNAL REFERENCES
IMG Taxon ID 2667527229
IMG RNA-Seq ID
Genbank
Genbank ID LT799039 (GCA_900167985.1)
Release Date 2017-03-18
NCBI Genbank Version LT799039
Assembly Accession GCA_900167985.1
SRA Runs
ANALYSIS PROJECT COMPOSITION
Study Genome sequencing of aromatic compound degrading bacteria and fungi
Number of Studies 1
Number of Projects 1
Number of Related Analysis Projects 0
Derived Analysis Projects 0
JGI INFORMATION
ITS Analysis Project ID 1087036 (Portal)
ITS Analysis Project Name Pseudomonas putida KT2440
ITS Analysis Product Name Microbial Improved Draft Isolate Genome
ITS NCBI Taxon ID
ITS Version Number 1

 

 

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